PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03753g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 409aa    MW: 45884 Da    PI: 9.0083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03753g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06112133426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               + C+++ +   C+yG++Ck+ H+
  Niben101Scf03753g00007.1 112 AVCKYWVK-EKCNYGNSCKYLHS 133
                               68******.9************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0682550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2112551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6108133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61108135IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6112132IPR000571Zinc finger, CCCH-type
SuperFamilySSF509787.33E-43131180IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.5E-34133351IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.7E-6139178IPR001680WD40 repeat
PfamPF004001.1E-5142178IPR001680WD40 repeat
PROSITE profilePS5029420.54146350IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.616146178IPR001680WD40 repeat
PRINTSPR003204.6E-6165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SuperFamilySSF509787.33E-43218401IPR017986WD40-repeat-containing domain
SMARTSM003203.5218257IPR001680WD40 repeat
PROSITE profilePS500828.67225266IPR001680WD40 repeat
SMARTSM003200.0046263301IPR001680WD40 repeat
PfamPF004000.039269301IPR001680WD40 repeat
PROSITE profilePS500829.506270310IPR001680WD40 repeat
PRINTSPR003204.6E-6288302IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6E-4304341IPR001680WD40 repeat
PfamPF004000.0053306340IPR001680WD40 repeat
PRINTSPR003204.6E-6328342IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.130.10.102.9E-6352400IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.4359396IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDTNVLQRGL MGRLHPSQDH KQRTTKKLVV CKHWLAGNCN RFHCQFLHSR ELVEPSWPKQ  60
QQQQHPKRFF DHHNPKKKKY YNNNTWRRSS TTTTAAGGGA IVVTNNIKTE KAVCKYWVKE  120
KCNYGNSCKY LHSWTTGNCF TLLAQLQGHE KAVTGIALPS GSDKLYSGST DKTLRLWDCQ  180
SGIDAGVFYL DGEIGCMLTE GPWIFVGLPN FVKARNTQTD TVLSLNGPVG QVYALAFDDN  240
NQMLFAGTEE GPILAWRFVN GSNFERAATL IGHTHHVVSL FAGAGNRLYS GSMDKSIRAW  300
SLETFQCLQV LTDHTSTAMS VLCWEDFLLS CSLDKTIKVW AAKESGNFDN TVRVYDLPSF  360
SERGRISFKQ AVRRIEIGPG GLLFTGDESG QVRVWKWLTD HQSSSTATA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-151434078325Tako8
6g6n_A2e-151434078325Tako8
6g6n_B2e-151434078325Tako8
6g6n_C2e-151434078325Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770879.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
RefseqXP_016500438.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-134C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1S4CH260.0A0A1S4CH26_TOBAC; zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A1U7W8930.0A0A1U7W893_NICSY; zinc finger CCCH domain-containing protein 48-like
STRINGXP_009770879.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-134zinc finger WD40 repeat protein 1