PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03735g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 311aa    MW: 35241.8 Da    PI: 6.8861
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03735g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.1e-2050111257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Niben101Scf03735g01005.1  50 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 111
                               58*****************8678*************************************97 PP
2Wus_type_Homeobox114.17e-3749113265
         Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                               ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Niben101Scf03735g01005.1  49 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 113
                               789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1234113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-735111IPR009057Homeodomain-like
PROSITE profilePS5007110.52746112IPR001356Homeobox domain
SMARTSM003894.9E-648116IPR001356Homeobox domain
PfamPF000462.4E-1751111IPR001356Homeobox domain
CDDcd000864.79E-751113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEAAQQQNQQ HYLHQQHLSI GQVTNNIIED GVGGNSSKNN SSSFMCRQSS TRWTPTTDQI  60
RILKDLYYNN GVRSPTAEQI QRISAKLRQY GKIEGKNVFY WFQNHKARER QKKRLIAAAA  120
TDSNNNIPMQ MRGVWRSVDD PIHHKYNNTT GIHCPSASSH GVLAVGQNGN YGYGTLAMEK  180
SFKDCSISPG GNSNGSMDHQ NITWVGVDPY TSHQSYPFLE KTKHFDETLV DDYEELQQEE  240
ENYQRVSALE TLPLFPMHEE NISSFCNIKH ESSGGFYTEW YRSDDHNLAA AARASLELTL  300
NSFIGRSPNS P
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792214.10.0PREDICTED: protein WUSCHEL
RefseqXP_016474994.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL111e-157WUS_PETHY; Protein WUSCHEL
TrEMBLA0A1S4AEE80.0A0A1S4AEE8_TOBAC; WUS
TrEMBLA0A1U7XZ160.0A0A1U7XZ16_NICSY; protein WUSCHEL
STRINGXP_009792214.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-43WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]