PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03693g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 624aa    MW: 68419 Da    PI: 4.7915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03693g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.33.4e-1042365992369
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                + LlecA+ +++++ e+a + L rl+e +s++gd+ +R+ +yf+eAL +rl+ +++++ +++ + + +     e + ++k+f++
  Niben101Scf03693g01007.1 236 LKSLLECAT-LADSEPENAVKSLIRLKESVSQQGDAKERVGFYFLEALYSRLSFQTDNIPSIFGAYTPE-----ELTLSYKVFND 314
                               5789****9.566689999999********************************999999888777775.....88999****** PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakf 168
                               ++P+ kf+hltaNqaIlea+e+++r+H++Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++f
  Niben101Scf03693g01007.1 315 ACPYSKFAHLTANQAILEATEKATRIHVVDFGIVHGIQWAAFLQALATRAAGKPvSIRISGIPSVVLGnsPAASLLATGNRLRDF 399
                               **************************************************88777*********877788999************ PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A+ l+++fef++ + + +++l+ +++r++p+E+laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  F
  Niben101Scf03693g01007.1 400 AKLLDLKFEFEP-ILTPVQELNESSFRIDPDETLAVNFMLQLYNLLDETSVGVK---TALNLAKSLNPSIVTLGEYEVSLNNVGF 480
                               ************.799******************************88777666...9*************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqa 337
                               l+rf +al+yys++f+sl+ +l ++s er+ vEr +lgr+i  +v + +a  rre +e +e+W+e +e aGFk+v+ls++a++qa
  Niben101Scf03693g01007.1 481 LQRFRNALNYYSTIFESLDPSLTQDSPERVQVERLILGRRIAGAVGTDEAGiRRECMEDKEHWKELMEGAGFKEVKLSHYAMSQA 565
                               *********************************************9999888********************************* PP

                      GRAS 338 klllrkvk.sdgyrveeesgslv.lgWkdrpLvs 369
                               k ll +++ s  y + ++   ++ l W+d+pL++
  Niben101Scf03693g01007.1 566 KILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLT 599
                               ********9999998877665555********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.015209582IPR005202Transcription factor GRAS
PfamPF035141.2E-101236599IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAAYMCTDSG NLMAIAQQVI KQKQQQEQLQ QQEQQQHQQF LGGVNPLCLS PWTGTHQSLT  60
NSPTLGYGGL TGGPGFTDPF QVVAGGTDGG EPGFQFPNME HHLTGFRFTD FSGGPGGEFD  120
SDEWMESLIG GGDSTGSSNL QSGSYAWHTS SEFAALYGDP FSNCPNRLSI GSSPPPPPLT  180
SDLNGVIFSE TQKNLNPLQP WVPPSSSPPV VHKESKVASV DMHCSSPETF SSKPLLKSLL  240
ECATLADSEP ENAVKSLIRL KESVSQQGDA KERVGFYFLE ALYSRLSFQT DNIPSIFGAY  300
TPEELTLSYK VFNDACPYSK FAHLTANQAI LEATEKATRI HVVDFGIVHG IQWAAFLQAL  360
ATRAAGKPVS IRISGIPSVV LGNSPAASLL ATGNRLRDFA KLLDLKFEFE PILTPVQELN  420
ESSFRIDPDE TLAVNFMLQL YNLLDETSVG VKTALNLAKS LNPSIVTLGE YEVSLNNVGF  480
LQRFRNALNY YSTIFESLDP SLTQDSPERV QVERLILGRR IAGAVGTDEA GIRRECMEDK  540
EHWKELMEGA GFKEVKLSHY AMSQAKILLW NYNYSSSYGL IDSPPGFLSL AWNDKPLLTF  600
LSRCGEAAAT DEQEPCSFVK RTRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462325991370GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251224.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_019251230.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1J6JNP80.0A0A1J6JNP8_NICAT; Scarecrow-like protein 4
STRINGXP_009794663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein