PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03647g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 804aa    MW: 86337.7 Da    PI: 6.6051
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03647g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.92.5e-14332392262
                               XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                               +++k+  r+++NRe+A+ sRqRKk ++eeLe+kv  + +  ++L  +++ +  e a+lk++
  Niben101Scf03647g01004.1 332 EDDKKRARLIRNRESAQLSRQRKKHYVEELEDKVRIMHSTIQDLNARISYIMAENATLKTQ 392
                               789*******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-17331395IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.266333396IPR004827Basic-leucine zipper domain
PfamPF001701.2E-12333393IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-12335393No hitNo description
Gene3DG3DSA:1.20.5.1707.3E-16335393No hitNo description
CDDcd147041.26E-20336387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MAGPILADPP PSAVANPTGE FDGLPIPPLD PTYFAQHMTA ADQGKIDGFP MELPADGEFM  60
LDDLDFDLSF DDIFLNNGDA VLNPDFLADC LVSDTDRVDP SFYGQPGNQS GEEPPGSKFV  120
PANLNCFGQP GSQLVGDFND SSRYFKSTSA EFCNFSGNQA AGGVVVMDTS SPELRQSSSG  180
SDVLNAPSST SSHQVSGDVA RYLNVPSLES NGSNHEGSRE SANDNKGLGD ARVLNCHSPE  240
SQGSGNCGSN VSEGLNYPSD SNKSVHSSPN FGNNSIKKGT VEEKIKLEGV DANISKCSSL  300
LKRKTSSEDS NNISIHQKLT NVALSDNVNN DEDDKKRARL IRNRESAQLS RQRKKHYVEE  360
LEDKVRIMHS TIQDLNARIS YIMAENATLK TQLGDAGVPS QVPPPPPGMY PHHPVMYPWM  420
PYTPPYMVKP QGSQVPLVPI PKLKPQGAAP APKSSKKLEK KRTEVKTKKV ASVSFLGLLL  480
FMLLFGGLVP LLNVRYSGMR EPFMSGDSFG SGFYNKHHGR VLAVNGPVNG TGQSGKYSGK  540
DYSSHCGRRG QDESAQPNVN GSDPLAASLY VPRNDKLVKI DGNLIIHSVL ASEKAMASHR  600
GADKNNRETG LAVPGDLAPA IAGSHPHLYR SPPVGQRALG NGEENGKSTM QQWFLEGVAG  660
PLLNSGMCTE VFQFDVSSSA PGAVVPASNA RNLSMEERQN ATRVHKVRNR RILNGPSVSL  720
SRPSLNISEE QTGKQENFSG NKSLSSMVVS VLVDPREAGD GDVDGMMSPK SLSRIFVVVL  780
IDSVKYVTYS CMLPFKGSVP VVTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1697710RQNATRVHKVRNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265649.10.0PREDICTED: bZIP transcription factor 17-like
TrEMBLA0A314L1T30.0A0A314L1T3_NICAT; Tgacg-sequence-specific dna-binding protein tga-1b
STRINGXP_009610632.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30292450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-117bZIP family protein