PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03540g00021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1106aa    MW: 121993 Da    PI: 6.6278
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03540g00021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22134235199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  Niben101Scf03540g00021.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDS 217
                               99*****************************9545444.38******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   ++++++l+++++r+
  Niben101Scf03540g00021.1 218 VLFI--RDEKQQLLLGIRRA 235
                               ****..5688889****997 PP
2Auxin_resp119.52.6e-39260343183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Niben101Scf03540g00021.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                               79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.5E-44124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41126249IPR015300DNA-binding pseudobarrel domain
CDDcd100177.10E-19133225No hitNo description
SMARTSM010195.6E-23134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97134236IPR003340B3 DNA binding domain
PfamPF023622.4E-20134235IPR003340B3 DNA binding domain
PfamPF065071.4E-34260343IPR010525Auxin response factor
PROSITE profilePS5174528.1399851069IPR000270PB1 domain
PfamPF023091.4E-69861070IPR033389AUX/IAA domain
SuperFamilySSF542778.63E-710031063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MKTPGNIAGA QQAAANVNPA EGEKKSINAE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS  120
DLSMKTNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRTRVSI  360
WEIDPVTAPF FICPTPPFFG SKRPRLPGMP DDDCSDLDGL FKRTMPWLGD DFGMKDPQGL  420
LGLSLVQWMN MQQNPSMQQP NYLHSLSGSV LHNVGGGADL SRQLGLSAAP QLPQHNTLQF  480
GTQRPNQQGQ VAAATLSPVG SIMQSQQQQL SDISQQPRQN LINQSVPTNQ VQAQLLQAQS  540
LVQSQNVLQQ QQSLQNQLQR TLPQQQQIMN QTQQQSFMPS QPSDPLNQQM HFSDNQLQLQ  600
LLQKLHQQQQ SLLAQQSVLQ QQSQLGPIQD QQKRLLDVSQ NFSRSLATSQ MLDMSQTTST  660
STSLSQSQVV QQQMTSQSNF RFSQPNQQSK VHQQPGIQPE LPGQVGQNLP PATNQLSTNC  720
SSLLTGAAGG GQSVVTDDIP SCSTSPSTNN CQNAVQPIMN GRMHRGTAAG DEATQSSVPL  780
LNSSGFEAMS TNSNLDKDLK HKSDVKPSVN ISKSPNHGFL APQTYLNTTG PHMDYLDSSS  840
SATSVCFSQN DVQLQQTTNP LSFNNQPVIF RDSQDGEVQG DLRNNVAFGS NMDNQLGLPM  900
MPDPLVTNSL MDSRKDLSNN ISSGGGMLSS YENPKEAQPE LSSSMVSQSF GVPDMAFNSI  960
DSTINDGSFM NRGAWAPPPQ VPRLRTYTKV YKRGAVGRSI DIARYSGYED LKQDLARRFG  1020
IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG  1080
NSLQNQACSS SDGGNVGQMD KNKVKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1702336447388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235972.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1J6KZH30.0A0A1J6KZH3_NICAT; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19