PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03494g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 521aa    MW: 60046.7 Da    PI: 7.7334
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03494g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.2e-10218253540
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                               k  rr+++NReAAr+sR+RKka++++Le     L++
  Niben101Scf03494g05002.1 218 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 253
                               7789***********************985555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-8210260No hitNo description
SMARTSM003381.6E-8214293IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266216260IPR004827Basic-leucine zipper domain
CDDcd147084.43E-23218270No hitNo description
SuperFamilySSF579593.0E-7218260No hitNo description
PfamPF001707.5E-8218256IPR004827Basic-leucine zipper domain
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
PfamPF141443.5E-31309381IPR025422Transcription factor TGA like domain
PfamPF141448.4E-31401472IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGFERAFVES SPEQENKLFF GVDVSYMDSS NKSYDALESN NQISFGGQHQ HHQQQFFYNH  60
HQQQQLQNNN QISFRMMQQS SSAIPGSLIR SKDSAGAYDL GELDQALFQY LDGQEPSSIQ  120
EQRQNSGMRP PTLNIFPSQP MHVEPSTANK MNTGLVSPAI SGSKRSSQPS MELSNNLKNN  180
DAPSASGPEP PKAAKREANR KGPTSSSEQD GPKTPDPKTL RRLAQNREAA RKSRLRKKAY  240
VQQLESSRIR LTQLEQELQR ARAQGYYFGG NSHLGGEQNL PVNMANMSSD AAVFDMEYAR  300
WLEEHHRLMC ELRNAVQEHF PENELRIYVD NCVTHYDEIM NLKSMLTKSD VFHLVSGMWK  360
TPAERCFMWM GGFRPSELLK VHAAVFDMEY ARWLEEHHRL MCELRNAVQE HFPENELRIY  420
VDNCVTHYDE IMNLKSMLTK SDVFHLVSGM WKTPAERCFM WMGGFRPSEL LKADNLRHQT  480
IHRLHQLLTT RQAARCFLAI AEYFHRLRAL SSLWLARPRQ E
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312680.10.0bZIP transcription factor TGA10
RefseqXP_009611363.10.0PREDICTED: transcription factor TGA2.3-like isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1S3YPP90.0A0A1S3YPP9_TOBAC; transcription factor HBP-1b(C38)-like isoform X1
STRINGXP_009611363.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22792145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-138bZIP family protein