PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03488g06004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 296aa    MW: 34359.7 Da    PI: 9.2095
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03488g06004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.8e-104088155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              s++kGV     +g W A+I+       ++r++lg+f ++ eAa a++ a+ +l+ 
  Niben101Scf03488g06004.1 40 SRFKGVV-GQHNGHWGAQIYTN-----QQRIWLGTFKSETEAAMAYDSAAIRLRS 88
                              6899996.4448******8883.....5**********99************985 PP
2B3992.9e-31166253186
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               f+k+ltpsdv+k++rlv+pkk+a+++  ++++  +++l+++d+s r+W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF 
  Niben101Scf03488g06004.1 166 FQKELTPSDVGKLNRLVIPKKYASKYfpQIQEVPDVELVFYDTSRRQWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRANDTIVFN 250
                               99**************************88888999************************************************9 PP

                               E-S CS
                        B3  84 ldg 86 
                               l +
  Niben101Scf03488g06004.1 251 LCQ 253
                               865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-64087IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-144097IPR016177DNA-binding domain
CDDcd000182.09E-214098No hitNo description
SMARTSM003804.5E-1841102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-164196IPR001471AP2/ERF domain
PROSITE profilePS5103216.2394196IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-34161251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-30164253IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-29165251No hitNo description
SMARTSM010192.9E-25166260IPR003340B3 DNA binding domain
PfamPF023622.3E-27166253IPR003340B3 DNA binding domain
PROSITE profilePS5086314.367166273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MISSTTTYQT GDCDSSSTNN QQSKKHKRNA YTRKACISGS RFKGVVGQHN GHWGAQIYTN  60
QQRIWLGTFK SETEAAMAYD SAAIRLRSQD SHRNLPWTNS TVQEPNFQRQ FSTEDILRMI  120
KEGSYPSKFD EYLKEKYEEC HPFNTLPVAE LKCVQANEGF SHKQLFQKEL TPSDVGKLNR  180
LVIPKKYASK YFPQIQEVPD VELVFYDTSR RQWKFRYCYW KSSQSFVFTK GWNRFVKDKG  240
LRANDTIVFN LCQYKTGPKE ISTDFVIDVL KGVEVLSEPK VEIEEKMKTQ STDDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2816525013101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257867.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6884e-90RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX10.0A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE00.0A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-92RAV family protein