PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03482g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 343aa MW: 38073.6 Da PI: 5.2539

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03482g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Niben101Scf03482g02002.1 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPSNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.5	1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Niben101Scf03482g02002.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.007	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.06E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.10E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-24	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.594	66	116	IPR017930	Myb domain
SMART	SM00717	2.0E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.08E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PSNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ 120 GNDENSSQEG ISSSSQSNVS KGQWERRLQT DIHMAKKALS DALSLDKSDS LPNNPIPQPA 180 LSSCTYASSA ENISRLLENW MKNSPKSSQF SQSNSECTTQ SSFNNLSIGQ GSSSSPSEGT 240 ISATTPEGFD PIFMSQSMMA DECNAFTTEN AGTFQVESKL NLPNLNAEYG FLFQEESKPN 300 LESEVPLTLL EKWLLDDAVN APAQEDLMGL GMEMNLGDAA DLF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRAV PSNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ  120
GNDENSSQEG ISSSSQSNVS KGQWERRLQT DIHMAKKALS DALSLDKSDS LPNNPIPQPA  180
LSSCTYASSA ENISRLLENW MKNSPKSSQF SQSNSECTTQ SSFNNLSIGQ GSSSSPSEGT  240
ISATTPEGFD PIFMSQSMMA DECNAFTTEN AGTFQVESKL NLPNLNAEYG FLFQEESKPN  300
LESEVPLTLL EKWLLDDAVN APAQEDLMGL GMEMNLGDAA DLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-26	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255624.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-131	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A1J6ICV9	0.0	A0A1J6ICV9_NICAT; Transcription factor myb30
STRING	XP_009594207.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	4e-93	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]