PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03441g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 286aa    MW: 32337.3 Da    PI: 10.1026
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03441g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74.1e-1519102186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  + +Liea  ++  +l+rg+l++++W+ev++ +  r+ g+  +r+ +qCk++++ l+k+yk +k+ ++       s++p+
  Niben101Scf03441g00009.1  19 CWSEGATETLIEAWGDRYIKLNRGNLRQKDWKEVADTVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKTKSSP------SKWPF 97 
                               7*************************************88777776689******************9998886......58*** PP

                  trihelix  82 fdqle 86 
                               +++l+
  Niben101Scf03441g00009.1  98 YNRLD 102
                               **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2617102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MESQTAAPTR PHAGGREDCW SEGATETLIE AWGDRYIKLN RGNLRQKDWK EVADTVNSRQ  60
NGVKPQRTDV QCKNRIDTLK KKYKLEKTKS SPSKWPFYNR LDYLIGTKNV SSSPCNRKLT  120
AAITLTIKSN SNPNPNFGAV NYSGGSSRLN SSGSNDSSHD DLPFGSGGRK SKMEYVGLAE  180
ETTAYKELAR AILRFGEIYE RIESTKQQHM VELEKQRMEF TKDLEVQRMN MFIETQLQIE  240
RAKRPARHPT STDPKPPNPI IFATSWSISG SSSTAFSFWV SMQTPK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786679.11e-159PREDICTED: uncharacterized protein LOC104234753
TrEMBLA0A1U7XIA31e-158A0A1U7XIA3_NICSY; uncharacterized protein LOC104234753
STRINGXP_009786679.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-62sequence-specific DNA binding transcription factors