PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03438g05008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 701aa MW: 76713 Da PI: 6.8116 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 280 | 300 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Niben101Scf03438g05008.1 280 PCPEFRK-GACRRGDMCEYAHG 300 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 5.6E-20 | 12 | 161 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-19 | 18 | 143 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.2E-10 | 55 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0031 | 59 | 89 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 19.094 | 59 | 162 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.32E-17 | 59 | 148 | No hit | No description |
PRINTS | PR01415 | 3.4E-5 | 60 | 75 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.2E-4 | 94 | 126 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.556 | 94 | 129 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.4E-5 | 113 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2300 | 130 | 165 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 280 | 302 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 280 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 308 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 55 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MNMNHLTVET EDTFASLLEF AANNDIEAFK SWMERDISGI HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSVDVLKLIL SLPGVDVNHC CGLDNSTALH CAASGGSLNA VDAVKLLVEA 120 GADPNIKNTN GHRPLDVIVI SPKFHTMKSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS 180 PSPGNRSSSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS 240 FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT SCDRRVCFFA HTHEELRPLY VSAGSAVPSP RSNTSAANAF 360 DFAAAMGLIP GSPSSVSVMR PSPFTPPMSP SANGISNIGW TQQNVPALHL PGSNLQSSRL 420 RSSLNARDIP AEDLTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFGHSVRP RTLTPSNLED 480 SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK AVESPLLQGS 540 FGVPPMRNMS PRGMEPISPM SSRASILSQS DKQQQFKSLS SRDLGSSASA IVGSPADAWS 600 NWGTAMGKPD WAVNTEEFGR LRRSSSFELA NNGEEPDLSW VQSLVKESPQ EAKDESASRV 660 SGLTKAGADI REASTSSSQI GQFDQLGAWM EQMKLDQLIP Q |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781965.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1U7X668 | 0.0 | A0A1U7X668_NICSY; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_009781965.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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