PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03427g10002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

VOZ

Protein Properties

Length: 483aa MW: 54061.2 Da PI: 6.0383

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03427g10002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	411.2	2e-126	204	423	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipeceg 82 pp saflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg pg pv+rp gi+lkd+llf+al ak++gk+vg+peceg Niben101Scf03427g10002.1 204 PPASAFLGPKCALWDCPRPAMGSDWCpksQDYCSDYHASLAPNEGYPGRPPVVRPMGIGLKDNLLFQALGAKAHGKDVGVPECEG 288 789********************87779*************************************************** PP VOZ 83 aatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfew 167 aatakspwna+elfdl+++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp++++ew Niben101Scf03427g10002.1 289 AATAKSPWNAPELFDLKVVEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQMMNEFGGLKRSYYMDPQPMKNLEW 373 ********************************************************************************* PP VOZ 168 hlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 hlyeyein++da+alyrlelklvd+kk +kgk+++ s++dlqk++grlta Niben101Scf03427g10002.1 374 HLYEYEINKYDACALYRLELKLVDGKKIPKGKITNVSVSDLQKQMGRLTA 423 **********************************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MRKVSKRGAC KSASHQLFKD RAKNRVDDLQ GVLTNLQSAR KESRSYDVGL LEEQVHQMLR 60 EWKAELNEPS PASSLQARTN TFGGSLVSSS DIYRLLLGEE EDDATSALAA PKPEPDAQKV 120 SVTGFQEGFN ATQVLQEQGF HLVDQCKGLP LVVNNSGINN LGIATQLDYH SFDLHQEYDQ 180 QYLPGFDALY LCLEDALPPI HISPPASAFL GPKCALWDCP RPAMGSDWCP KSQDYCSDYH 240 ASLAPNEGYP GRPPVVRPMG IGLKDNLLFQ ALGAKAHGKD VGVPECEGAA TAKSPWNAPE 300 LFDLKVVEGE TIREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQM MNEFGGLKRS 360 YYMDPQPMKN LEWHLYEYEI NKYDACALYR LELKLVDGKK IPKGKITNVS VSDLQKQMGR 420 LTAEFPLDNK RTVKGRAKAA ILKNVGNIQA APIPMLPTCE EFDYGTGEPY DYLVDDLDGY 480 FIT

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MRKVSKRGAC KSASHQLFKD RAKNRVDDLQ GVLTNLQSAR KESRSYDVGL LEEQVHQMLR  60
EWKAELNEPS PASSLQARTN TFGGSLVSSS DIYRLLLGEE EDDATSALAA PKPEPDAQKV  120
SVTGFQEGFN ATQVLQEQGF HLVDQCKGLP LVVNNSGINN LGIATQLDYH SFDLHQEYDQ  180
QYLPGFDALY LCLEDALPPI HISPPASAFL GPKCALWDCP RPAMGSDWCP KSQDYCSDYH  240
ASLAPNEGYP GRPPVVRPMG IGLKDNLLFQ ALGAKAHGKD VGVPECEGAA TAKSPWNAPE  300
LFDLKVVEGE TIREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQM MNEFGGLKRS  360
YYMDPQPMKN LEWHLYEYEI NKYDACALYR LELKLVDGKK IPKGKITNVS VSDLQKQMGR  420
LTAEFPLDNK RTVKGRAKAA ILKNVGNIQA APIPMLPTCE EFDYGTGEPY DYLVDDLDGY  480
FIT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019235319.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_019235320.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_019235321.1	0.0	PREDICTED: transcription factor VOZ1-like
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1J6K818	0.0	A0A1J6K818_NICAT; Transcription factor voz1
STRING	XP_009780205.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]