PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf03421g05004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 228aa MW: 25774.7 Da PI: 7.3586 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.7 | 2.4e-32 | 52 | 107 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 rY+eClkNhA+ +Gg+avDGCgEf+p+ ge gt +alkCaAC+CHRnFHR+eve e Niben101Scf03421g05004.1 52 PRYRECLKNHAVGIGGQAVDGCGEFLPA-GEAGTLDALKCAACNCHRNFHRKEVEGE 107 69*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-22 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.0E-29 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.1E-29 | 53 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.803 | 54 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.75E-20 | 150 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-31 | 155 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-24 | 166 | 221 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MEFGDEHEDQ EEEIANIFQI PATTENNYQD FGEGGQISRT AATLRKNNVP SPRYRECLKN 60 HAVGIGGQAV DGCGEFLPAG EAGTLDALKC AACNCHRNFH RKEVEGEILN FHHPIPPPTL 120 HHPPHHYPYR YLQRPLALPS ITSREDIEDY VSNPSSSGGG GSGSSKRFRT KFTQDQKEKM 180 FAFAERLGWR IQKENEAAVQ QFCAETNIRR QVFKVWMHNN KHTLGKKS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 164 | 223 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772007.1 | 1e-141 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_016482443.1 | 1e-141 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 2e-70 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1S4B0X3 | 1e-140 | A0A1S4B0X3_TOBAC; zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A1U7VW40 | 1e-140 | A0A1U7VW40_NICSY; zinc-finger homeodomain protein 2-like | ||||
STRING | XP_009772007.1 | 1e-140 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-62 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|