PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03419g01009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 393aa MW: 43130 Da PI: 6.5854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03419g01009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.3e-10	239	287	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq Niben101Scf03419g01009.1 239 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 287 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.10E-11	234	291	No hit	No description
SuperFamily	SSF47459	5.37E-17	234	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.472	236	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-16	236	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-7	239	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-10	242	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MGSKDNGDMR LQHRNGGDTS FNCPSSMPNV DPFSASCWDP LLSLNQKESF KGASVVGQNE 60 FDNLPYQSSH FGHYPSDPNL VEMVPKIPAF GNESFSELVN AFPLQEQLRG GSCYPNYVKN 120 RGIPTEGAFS KGPHSQDECQ ISGEGAVEAS PNGKRKISGN HSLSNVSKNV EGELQKAPSR 180 DNSDCSKERD GKKHKTDQNN SSNLRSKEAG KQVKEDSDGG EPPKDNYVHI RAKRGQATNS 240 HSLAERVRRE RISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV 300 NPELNFDIDR ILSKEMLHQQ TSNAVLLGLG PGMSSSLPFP GISHGSFTGM PGTTPPFHPL 360 PQNVWDNELQ SLLQMGFESN SSMNNMGPNG NNL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MGSKDNGDMR LQHRNGGDTS FNCPSSMPNV DPFSASCWDP LLSLNQKESF KGASVVGQNE  60
FDNLPYQSSH FGHYPSDPNL VEMVPKIPAF GNESFSELVN AFPLQEQLRG GSCYPNYVKN  120
RGIPTEGAFS KGPHSQDECQ ISGEGAVEAS PNGKRKISGN HSLSNVSKNV EGELQKAPSR  180
DNSDCSKERD GKKHKTDQNN SSNLRSKEAG KQVKEDSDGG EPPKDNYVHI RAKRGQATNS  240
HSLAERVRRE RISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV  300
NPELNFDIDR ILSKEMLHQQ TSNAVLLGLG PGMSSSLPFP GISHGSFTGM PGTTPPFHPL  360
PQNVWDNELQ SLLQMGFESN SSMNNMGPNG NNL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262623.1	0.0	PREDICTED: transcription factor bHLH74 isoform X2
Swissprot	Q6NKN9	2e-78	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A314L7E0	0.0	A0A314L7E0_NICAT; Transcription factor bhlh74
STRING	XP_009590631.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5250	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]