PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03403g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 628aa MW: 66932.1 Da PI: 6.9495

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03403g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.1e-07	205	233	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r++W++ Ed l+ av++ G g+W+ I + Niben101Scf03403g02005.1 205 RKPWSAAEDMELIAAVQKCGEGNWANILK 233 789***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.864	200	253	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.21E-11	201	290	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-10	201	249	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-4	204	255	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-5	205	233	IPR001005	SANT/Myb domain
CDD	cd11660	5.36E-11	206	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MVEKRKLQKR VFIDEDDVSS LLQRYTAMTL LAVLQEVSQV QDVKIDWNEL VKKTTTGITN 60 AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATAYVKVL 120 IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLH GISAYGTKIT VPVSVEKQPL 180 PSVTAAEVVD TNGSANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQEFV QVCAVLQIGN FSFLICFSFY EMPEEDLVGN RWAIIRKRHG NMVGNGSQLS 300 EAQLAARHAM SLALGGNLRA ACPISTNVGP NSGSAPSNSL HFPAANNASG GPISEHQQDL 360 VPSEPRVIPK NPLPKPAINP DSLVKTAAMA AGSRIPTPSG AVASLQKAAE SKKVVQIMPG 420 GTPAVKSSVP GSTNGLPSNV HFIRNGLVSR PPGCSPSNAS QSAVRPNRGA VPSRTNVSSG 480 VPAAPTSSSA RVLEANTKAV AIQENPTAIL SNARIEKVEV DRAASMDAQQ QVRRDQTFGS 540 SNLLTEKIEG QTSILGHTVK EHGGESKASR VGAQEKLIPS LETASNNSIR NQGENSNKNE 600 NTKIVLALES SGVQGPAPET CNKFFKES

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MVEKRKLQKR VFIDEDDVSS LLQRYTAMTL LAVLQEVSQV QDVKIDWNEL VKKTTTGITN  60
AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATAYVKVL  120
IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLH GISAYGTKIT VPVSVEKQPL  180
PSVTAAEVVD TNGSANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQEFV QVCAVLQIGN FSFLICFSFY EMPEEDLVGN RWAIIRKRHG NMVGNGSQLS  300
EAQLAARHAM SLALGGNLRA ACPISTNVGP NSGSAPSNSL HFPAANNASG GPISEHQQDL  360
VPSEPRVIPK NPLPKPAINP DSLVKTAAMA AGSRIPTPSG AVASLQKAAE SKKVVQIMPG  420
GTPAVKSSVP GSTNGLPSNV HFIRNGLVSR PPGCSPSNAS QSAVRPNRGA VPSRTNVSSG  480
VPAAPTSSSA RVLEANTKAV AIQENPTAIL SNARIEKVEV DRAASMDAQQ QVRRDQTFGS  540
SNLLTEKIEG QTSILGHTVK EHGGESKASR VGAQEKLIPS LETASNNSIR NQGENSNKNE  600
NTKIVLALES SGVQGPAPET CNKFFKES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	206	PRRRRKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019260994.1	0.0	PREDICTED: uncharacterized protein LOC109238952
TrEMBL	A0A314LCL1	0.0	A0A314LCL1_NICAT; Uncharacterized protein
STRING	XP_009795383.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-70	MYB_related family protein