PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03326g05011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 351aa    MW: 38154.2 Da    PI: 6.5029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03326g05011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-0893117126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC+ f++ G C+y ++C+FaHg
  Niben101Scf03326g05011.1  93 FKTKLCCKFRA-GVCPYINNCNFAHG 117
                               69*********.*************8 PP
2zf-CCCH17.76.2e-06173196326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                + C+ f+    C+yGd+C+F H+
  Niben101Scf03326g05011.1 173 GRHCKKFYTEEGCPYGDTCTFLHD 196
                               5669*****9*************7 PP
3zf-CCCH437.7e-14230255126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G++C+FaHg
  Niben101Scf03326g05011.1 230 WKTRICNKWETTGYCPFGSKCHFAHG 255
                               8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.03E-790123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-1390124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66292119IPR000571Zinc finger, CCCH-type
SMARTSM003560.008992118IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-9168198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7169198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347170198IPR000571Zinc finger, CCCH-type
SMARTSM003560.38170197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10226260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-17226259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422229257IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8229256IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11230255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDFMGEASFA GGNMIPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRDWNTG PSSETPSSSN  60
RSGSEPPHKK SRSSQGADSH VTSRSKAIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE  120
LHKPPPNWQE IVAEHESEDG GGGGVMLESR EEHQIPTVSS PELCIETQRS FKGRHCKKFY  180
TEEGCPYGDT CTFLHDEQSR ARESVAISVT PTVGGFGNNA AGANLKPSNW KTRICNKWET  240
TGYCPFGSKC HFAHGAAELH KYGGGLMEME GKDPLSTPPD LRQGGGSLKT TESTVPSTIS  300
APHTDVYHLG SGVQVQRPSG IVQRAGHGVI QKWKGPDKIS KIYGDWIDDI E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764664.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-121C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U7VQM60.0A0A1U7VQM6_NICSY; zinc finger CCCH domain-containing protein 56-like
STRINGXP_009764664.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-118C3H family protein