PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03239g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 359aa MW: 39472.4 Da PI: 6.1006

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03239g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.5e-31	176	234	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+++dp+++++tY++eHnh+ Niben101Scf03239g00001.1 176 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSARKQVERNRSDPNMFIVTYTSEHNHP 234 79**********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	166	236	IPR003657	WRKY domain
PROSITE profile	PS50811	34.681	170	236	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-27	173	236	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	175	235	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	177	234	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEDDWDLHAV VKGCAASSTA ATTITTTSSA ATTTTFCSFQ PRQDGNIFSF QDPFVPRFDN 60 PNNTAFEELH NLYKPFFPKS QPQQQPPLSP QNIPISPLSV LGGLQDLSPQ QTLIKQQQQH 120 IHQLNTRVLT QPKQSLSVNG STNSTTSVSH TQSPRPKRRK NQLKKVCQVP AEGLSSDMWS 180 WRKYGQKPIK GSPYPRGYYR CSTSKGCSAR KQVERNRSDP NMFIVTYTSE HNHPMPTHRN 240 SLAGSTRQKP VNSEAGTPSD SNKPTSSSSV SSLACNSPAT EKQESSKEEK EDIFEDDDDE 300 FGSSNIGLDN MEPADDDFFE GLEELAANAT GDCFPDNFPG SVQFPWLTNN ATTTAAGGV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEDDWDLHAV VKGCAASSTA ATTITTTSSA ATTTTFCSFQ PRQDGNIFSF QDPFVPRFDN  60
PNNTAFEELH NLYKPFFPKS QPQQQPPLSP QNIPISPLSV LGGLQDLSPQ QTLIKQQQQH  120
IHQLNTRVLT QPKQSLSVNG STNSTTSVSH TQSPRPKRRK NQLKKVCQVP AEGLSSDMWS  180
WRKYGQKPIK GSPYPRGYYR CSTSKGCSAR KQVERNRSDP NMFIVTYTSE HNHPMPTHRN  240
SLAGSTRQKP VNSEAGTPSD SNKPTSSSSV SSLACNSPAT EKQESSKEEK EDIFEDDDDE  300
FGSSNIGLDN MEPADDDFFE GLEELAANAT GDCFPDNFPG SVQFPWLTNN ATTTAAGGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-24	160	237	2	80	Disease resistance protein RRS1
5w3x_D	1e-24	160	237	2	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019223727.1	0.0	PREDICTED: WRKY transcription factor 22-like
TrEMBL	A0A1J6JK95	0.0	A0A1J6JK95_NICAT; Wrky transcription factor 22
STRING	XP_009768958.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2591	24	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	8e-59	WRKY family protein