PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03236g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 327aa    MW: 36374.5 Da    PI: 5.485
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03236g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd  lv +v+++G+g+W++++ + g++R+ k+c++rw +yl
  Niben101Scf03236g03003.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTKTGLRRCSKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding43.47.9e-1467112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ +E++ ++++ ++lG++ W++ a++++  Rt++++k++w+++l
  Niben101Scf03236g03003.1  67 RGSFSDQEEKMIIQLQALLGNK-WAAMASYLP-ERTDNDIKNYWNTHL 112
                               899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.873965IPR017930Myb domain
SuperFamilySSF466894.87E-3011108IPR009057Homeodomain-like
SMARTSM007175.6E-151363IPR001005SANT/Myb domain
PfamPF002496.3E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241568IPR009057Homeodomain-like
CDDcd001674.28E-111661No hitNo description
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129417.60266116IPR017930Myb domain
PfamPF002493.8E-1367112IPR001005SANT/Myb domain
CDDcd001671.64E-969112No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2469117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRLPCCDKV GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTKTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF SDQEEKMIIQ LQALLGNKWA AMASYLPERT DNDIKNYWNT HLKKKMKNLE  120
EKCSGDNDLF SVQNGHNLSS SNSTSRGQWE RTLQADINMA KKALHNALSL ENSTPYIKQE  180
TPVQVSTYAS STENIARLLQ GWMTSSSSTN NSENSKTSSN NIAATTDSSS CDGTPSAESK  240
VGGMVLMEAL ESLFGLESSF ERSSSDQLSE TASPEASKLQ VEIKKEENTN SQVSLSVMLE  300
NWLLDENTIH GKDDLTSFSF DETADLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-251411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-251411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258360.10.0PREDICTED: myb-related protein 306-like
SwissprotQ9SN782e-99MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A314LFV60.0A0A314LFV6_NICAT; Transcription factor myb30
STRINGXP_009765566.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-100myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]