PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03169g06001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 740aa MW: 80509.7 Da PI: 7.9408 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.4 | 3.2e-24 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD Niben101Scf03169g06001.1 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGD 239 99****************************9743..345679******************************************* PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 v+F ++ ++el+++v+r+ Niben101Scf03169g06001.1 240 AVLFL--RTADGELRLGVRRA 258 *****..4589999**99986 PP | |||||||
2 | Auxin_resp | 112.6 | 3.8e-37 | 283 | 364 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s++++F+++YnPr s+s F+ +++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L Niben101Scf03169g06001.1 283 VVNAISSTNAFSICYNPRGSSSGFILPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 364 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-42 | 151 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-40 | 151 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.50E-22 | 155 | 257 | No hit | No description |
SMART | SM01019 | 5.2E-22 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-22 | 157 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.31 | 157 | 259 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.4E-32 | 284 | 364 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MMCGLIDLNT VDNDDVGEET TTAPVSPASS STASGCSDLT SSSLPAVASV CLELWHACAG 60 PLISLPKKGS AVVYLPQGHL EHLSEYPPIA YNLPPHVFCR VVDVKLQADA ASDEVYAQVS 120 LVPDNQIEQK WRDGDIDSDT EEEEIEGAGK STTPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYRQ QRPSQELVAK DLHGIKWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA 240 VLFLRTADGE LRLGVRRAAQ AKTCSNFLAA YSQLLNVSGI VDVVNAISST NAFSICYNPR 300 GSSSGFILPY HKFSKTLAHP FSAGMRFKMR VETEDAAEQR FTGLVVGVSD VDPVRWPGSK 360 WRCLLVRWDD LDICRHNRVS PWEIEPSGSA SVSSSLVMPS AKRTRVGFPI TKADFPIPRD 420 GIAVSDFGES SRFQKVLQGQ EILGINSPYG GFDAHSPRTG GIKCFPGFPS SGTSRMGNNI 480 RTLLGDTDKS PESIGFSDYS GFNKVLQGQE TFSTPRNGRG HASSLMQEKS RTGIIVGIQV 540 PSHVNRWSAP NQGNRSHCNP NTLVPASSPP SVLSFQHPRS PVSKFQAMFN HKHGKLETAT 600 QALDMSESCS RHLASGSHAE DISRKGDTQG ISSFSFLKEQ KQTGISHLSL GTQSSQNLVS 660 MCKTSCRIFG FPLTENKLNA TRAENPAEAV YSRGLETTFL PSTDGKLQPG PPLMTNVVGT 720 NFTKVNDLYA ARDVLLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-108 | 49 | 393 | 18 | 361 | Auxin response factor 1 |
4ldy_B | 1e-108 | 49 | 393 | 18 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226082.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X2 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1J6IMS3 | 0.0 | A0A1J6IMS3_NICAT; Auxin response factor | ||||
STRING | XP_009799485.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-179 | ARF family protein |