PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03072g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24388.5 Da PI: 6.5343 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 52 | 104 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k Niben101Scf03072g00004.1 52 KRKLKDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWK 104 458899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.7 | 1.5e-38 | 51 | 142 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kr+l++eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + e++rLe+ev + Niben101Scf03072g00004.1 51 RKRKLKDEQVNLLEQSFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSDHDTNVVEKCRLESEVLK 135 8************************************************************************************ PP HD-ZIP_I/II 87 Lreelke 93 L+++l+e Niben101Scf03072g00004.1 136 LKDQLSE 142 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.698 | 46 | 106 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-18 | 49 | 110 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-18 | 51 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.19E-16 | 51 | 107 | No hit | No description |
Pfam | PF00046 | 9.0E-17 | 52 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 53 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.4E-6 | 77 | 86 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 81 | 104 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-6 | 86 | 102 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MNHQVVADEM VLISQYYPDI YTQLVPQQGE SKPRRRRKKK QGEGNGSGVM RKRKLKDEQV 60 NLLEQSFGNE HKLESERKDK LASELGLDPR QVAVWFQNRR ARWKSKKLEE EYSKLKSDHD 120 TNVVEKCRLE SEVLKLKDQL SEAEKEIHRL LLERCDGVSS NNSPSTSSFS MEAAMEPPFL 180 GEFGMDGLDN MFYTPDNTYV QGLDWVNLYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | RRRRKKK |
2 | 34 | 55 | RRRKKKQGEGNGSGVMRKRKLK |
3 | 37 | 53 | KKKQGEGNGSGVMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590483.1 | 1e-132 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_016433151.1 | 1e-132 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 7e-81 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A1S3X037 | 1e-131 | A0A1S3X037_TOBAC; homeobox-leucine zipper protein ATHB-40-like | ||||
STRING | XP_009590483.1 | 1e-132 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-68 | homeobox protein 21 |
Publications ? help Back to Top | |||
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