PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03021g03026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26133.1 Da PI: 9.7109 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.2e-19 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F +++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k Niben101Scf03021g03026.1 87 KKRRLTENQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 140 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.8e-41 | 86 | 177 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl+++qv++LE+sF ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEk++e L+++yd+lk++ ++L ke+e Niben101Scf03021g03026.1 86 EKKRRLTENQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKEFEELRNQYDNLKSDYNNLLKEKE 170 69*********************************************************************************** PP HD-ZIP_I/II 86 eLreelk 92 +Lr+e+ Niben101Scf03021g03026.1 171 NLRAEVF 177 ***9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-20 | 77 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 82 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 85 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-15 | 87 | 143 | No hit | No description |
Pfam | PF00046 | 9.2E-17 | 87 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 92 | 141 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-6 | 113 | 122 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-6 | 122 | 138 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-13 | 142 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MLYSGGSGAF NFDGALIQKQ RVMSSSSTVK EHIGSLFVPG CSSSYLGSSS MVSFGRVNGG 60 KRLFFDSFDQ EENEADELGE YFHQSEKKRR LTENQVQFLE KSFGEENKLE PERKVQLAKE 120 LGLQPRQIAI WFQNRRARWK TKQLEKEFEE LRNQYDNLKS DYNNLLKEKE NLRAEVFQLT 180 DKLLLKERKN GQLTLPDFQK HSDASPKETK ADPISRXVRH NRKLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 142 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773747.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_016461905.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q6ZA74 | 5e-40 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q9XH36 | 5e-40 | HOX5_ORYSI; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | A0A1S3ZBS7 | 1e-135 | A0A1S3ZBS7_TOBAC; homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A1U7W139 | 1e-135 | A0A1U7W139_NICSY; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_009773747.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 8e-41 | homeobox 1 |
Publications ? help Back to Top | |||
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