PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02990g09005.1
Common NameHB1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 363aa    MW: 40945.4 Da    PI: 8.7748
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02990g09005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox567e-18119173256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tk q   Lee F+++ +++ ++++eLA++l+L  rqV vWFqNrRa+ k
  Niben101Scf02990g09005.1 119 RKKFRLTKAQSALLEESFKQHTTLNPKQKQELARNLNLRPRQVEVWFQNRRARTK 173
                               678899***********************************************98 PP
2HD-ZIP_I/II121.73.7e-39119207190
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk rl+k q++lLEesF+++++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +
  Niben101Scf02990g09005.1 119 RKKFRLTKAQSALLEESFKQHTTLNPKQKQELARNLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTEENRRLHKELQ 203
                               699********************************************************************************** PP

               HD-ZIP_I/II  86 eLree 90 
                               eL+ +
  Niben101Scf02990g09005.1 204 ELK-A 207
                               **9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-18107176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-17112178IPR009057Homeodomain-like
PROSITE profilePS5007117.605115175IPR001356Homeobox domain
SMARTSM003892.0E-15117179IPR001356Homeobox domain
PfamPF000462.2E-15119173IPR001356Homeobox domain
CDDcd000862.53E-15119176No hitNo description
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PfamPF021834.0E-11175208IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.6E-23175218IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-10275308IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.0E-24275318IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGSFDDISCT GLVLGLGFST MADQKSTKIA PVVMAKGPSL GFEPSLTLSL SGDHTYNKQQ  60
AVKNDHQSAD LYRQDSAASS YSNASVKRER DVGSEEATTE VERVSSRVSD EDDDGSNARK  120
KFRLTKAQSA LLEESFKQHT TLNPKQKQEL ARNLNLRPRQ VEVWFQNRRA RTKLKQTEVD  180
CEILKKCCET LTEENRRLHK ELQELKAVKI AQPLYMQRPA ATLTMCPSCE RIGGVGENTS  240
KNPFTLAQKP HFYNSFTNPS AAFWFQNRRA RTKLKQTEVD CEFLKKCCET LTEENRRLHK  300
ELQELKAVKI AQPLYMQLPA DMLTMCPSCE RIGGVGENPS KNPFTLAQKS HFYNSFTNPS  360
AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267275RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592889.11e-169PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_016496679.11e-169PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-87HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLC6FFS40.0C6FFS4_NICBE; Homeodomain leucine-zipper 1
STRINGXP_009592889.11e-168(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-83HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]