PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02955g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 264aa    MW: 30079.3 Da    PI: 8.785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02955g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1288140155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               rr +h  +Er+RR+++   ++ Lr+llP       ++K s ++   +Av+YIk++q
  Niben101Scf02955g02004.1  88 RRIMHRDIERQRRREMSALYSSLRSLLPLqY---VKGKRSVSDHMHEAVNYIKEMQ 140
                               799**************************66...9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.36E-1086144No hitNo description
PROSITE profilePS5088813.84687139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-988140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1088153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-1488159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001493145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.558195264IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MYSLQENDEL VFQILSNPCQ QSNISQDLVM DYASLETRTH DPLNINNSQV NKRIPKRILG  60
TTDNNIPDHK KNETAAAAPA PADDFKLRRI MHRDIERQRR REMSALYSSL RSLLPLQYVK  120
GKRSVSDHMH EAVNYIKEMQ ANIKELEKRR DLLIKSSIPN SVQNGSTGNY RSNNFTLSPD  180
CVRVSPCLQG GIEILISVDC KSQSFPLSRV LRDLLKQGIN VVSCVSAKVN QRSLYTIQIE  240
VCDMNNIDRQ ALQQKVIDLI NVEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801441.11e-178PREDICTED: transcription factor bHLH36-like
RefseqXP_009801442.11e-178PREDICTED: transcription factor bHLH36-like
RefseqXP_016489167.11e-178PREDICTED: transcription factor bHLH36-like
RefseqXP_016489168.11e-178PREDICTED: transcription factor bHLH36-like
TrEMBLA0A1S4BJR81e-177A0A1S4BJR8_TOBAC; transcription factor bHLH36-like
TrEMBLA0A1U7YBD91e-177A0A1U7YBD9_NICSY; transcription factor bHLH36-like
STRINGXP_009801441.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-43bHLH family protein