PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02955g01007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 249aa MW: 28535.1 Da PI: 7.204

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02955g01007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.5e-07	102	139	2	41
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKa 41 + h e+Er+RR+++ + ++ r+llP +kK+ K+ Niben101Scf02955g01007.1 102 KILHREIERQRRQEMSNLYASFRQLLPLeY---LKKKVRKM 139 667*************************44...44444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-6	99	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.72E-5	99	140	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-4	100	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	102	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMDNFHSLFP FQQNDDNDDH QLLYPPTNTN SSSFIYYQED NIQLQDQVTD LTPFHSRELD 60 RNNVHLNNTN KINKRGKKSQ NSSSAVSLHV DENTADHCKQ KKILHREIER QRRQEMSNLY 120 ASFRQLLPLE YLKKKVRKME DNRDKLKKAL SSSDVEYPKS GFSSSAAIIT VRLCLDGMEI 180 FTDCSVTNEG FYISTVLEVL LREGLSILSC SCNKVNGRLL HTIRTEVCSP SSIDALELQQ 240 KLAATVNSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801444.1	1e-154	PREDICTED: transcription factor bHLH118-like
Refseq	XP_016489170.1	1e-154	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S4BJW0	1e-153	A0A1S4BJW0_TOBAC; transcription factor bHLH118-like
TrEMBL	A0A1U7YQE4	1e-153	A0A1U7YQE4_NICSY; transcription factor bHLH118-like
STRING	XP_009801444.1	1e-154	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-24	bHLH family protein