PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02823g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 265aa    MW: 29667.3 Da    PI: 8.1185
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02823g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18116170256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tkeq  +Le+ F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Niben101Scf02823g01002.1 116 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRDLATRLSLRPRQVEVWFQNRRARTK 170
                               788899***********************************************98 PP
2HD-ZIP_I/II1185.2e-38116205191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+keq+++LE+sF+e+++L++++K +la++L l+prqv+vWFqnrRARtk+kq+++d+e Lk++y+ lk en+rL+ke +
  Niben101Scf02823g01002.1 116 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRDLATRLSLRPRQVEVWFQNRRARTKLKQIDVDCEILKKCYEDLKGENRRLNKELQ 200
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eL+ +l
  Niben101Scf02823g01002.1 201 ELK-SL 205
                               **9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17104166IPR009057Homeodomain-like
PROSITE profilePS5007116.908112172IPR001356Homeobox domain
SuperFamilySSF466891.15E-17114180IPR009057Homeodomain-like
SMARTSM003894.1E-16114176IPR001356Homeobox domain
PfamPF000468.3E-16116170IPR001356Homeobox domain
CDDcd000862.41E-14116173No hitNo description
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
SMARTSM003401.0E-14172215IPR003106Leucine zipper, homeobox-associated
PfamPF021833.4E-9172205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MICSTRLSLS LLGSSGESTT PNDSTIHQHN NKRKSNQDQE LDIYPFPSLT LCLSSTAVNS  60
SVISAAVSSL SNSSVKRERD ASFEEEVELD TKKVIISPKL DDVDQDQDED HEFGTRKKLR  120
LTKEQSAVLE DSFKEHSTLN SKQKRDLATR LSLRPRQVEV WFQNRRARTK LKQIDVDCEI  180
LKKCYEDLKG ENRRLNKELQ ELKSLKMAAP FRVQLPAATL SICPSCERTY SGGGDSSATK  240
ISFPIGDQKP NFYGSFSNSS AALLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120TRKKLRL
2164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483184.11e-160PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-63HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S4B2W31e-158A0A1S4B2W3_TOBAC; homeobox-leucine zipper protein HAT22-like
STRINGXP_009783420.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-59HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]