PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02822g02014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 427aa    MW: 46682.5 Da    PI: 8.3253
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02822g02014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-114267227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++G++C+F+H+p
  Niben101Scf02822g02014.1 42 GEPDCSYYIRTGLCRFGSTCRFNHPP 67
                              6899********************97 PP
2zf-CCCH37.73.4e-1290112527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C+++++tGtCk+G++CkF+H++
  Niben101Scf02822g02014.1  90 ECQYYLKTGTCKFGATCKFHHPR 112
                               7********************96 PP
3zf-CCCH33.85.7e-11136158527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C +++rt +Ck+G++CkF+H++
  Niben101Scf02822g02014.1 136 ECTYYMRTAQCKFGSTCKFHHPQ 158
                               8********************97 PP
4zf-CCCH36.58.1e-12289313327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C+f+++tG Ck+G+ C+F+H++
  Niben101Scf02822g02014.1 289 QPDCQFYMKTGDCKFGAVCRFHHPR 313
                               789********************96 PP
5zf-CCCH37.34.6e-12333359127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C f++r+G+Ck+G++CkF H++
  Niben101Scf02822g02014.1 333 PGEPMCIFYSRYGICKFGPSCKFDHPM 359
                               57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4834068IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9285113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-689114IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-990112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-591112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074133158IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8135158IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004286314IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5290316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5292316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925332360IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5335359IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4337357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDISLSEGPP SLSPSLHQDS LWQMNLRSME SMVSGPYPVR EGEPDCSYYI RTGLCRFGST  60
CRFNHPPNRK LALAAASING EYPERIGQLE CQYYLKTGTC KFGATCKFHH PRDKAGIVGR  120
VTLNVLGYPL RANENECTYY MRTAQCKFGS TCKFHHPQPS NLMVSSRGST VYPPSPPSTT  180
PGQMSYPLSR ASFISGARWQ GSSSYAPLPV LQGVVSFPGF TYNAQLGSVS SAEGQQQTAG  240
NSQVYGSSRS SDNPTMGSEG MNSSYRASSL PVGYYALQGE NVFPERVGQP DCQFYMKTGD  300
CKFGAVCRFH HPRERLLPPP DCLLSPIGLP LRPGEPMCIF YSRYGICKFG PSCKFDHPMR  360
VFTYNIPASS STDDPSDRHL LGSSSGTGAS TLTSEGIVEA ASTTPRRLSL SETRKMPPGD  420
NNFDREG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769498.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009769499.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009769500.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009769502.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7W4E60.0A0A1U7W4E6_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_009769498.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-165zinc finger protein 1