PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02821g14006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 177aa MW: 20148 Da PI: 8.878 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.4e-10 | 112 | 141 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+++N+ ++ Lr+l+P++ Niben101Scf02821g14006.1 112 QRMTHIAVERNRRKQMNEHLAVLRSLMPES 141 79**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.47E-9 | 109 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.04E-8 | 110 | 145 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-9 | 110 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.864 | 111 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-8 | 112 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MALEALSSNE LLNFIIYDTI SATPFTSNNL DPSSSENAAS GTLLLDHENG LLTLPQHFCG 60 HEQQYSTASV PETTTITTIR REKNLAVAQG SGRKKRRRRP KVCKNKEEAE NQRMTHIAVE 120 RNRRKQMNEH LAVLRSLMPE SYVQRVCNIT LSFIHSLVFL NIILRITMTF DNIFTTE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | RKKRRRR |
2 | 93 | 98 | KKRRRR |
3 | 112 | 123 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763212.1 | 1e-82 | PREDICTED: transcription factor bHLH71-like | ||||
Refseq | XP_016456410.1 | 9e-83 | PREDICTED: transcription factor bHLH71-like | ||||
TrEMBL | A0A1S3YWI7 | 2e-81 | A0A1S3YWI7_TOBAC; transcription factor bHLH71-like | ||||
TrEMBL | A0A1U7V4T9 | 2e-81 | A0A1U7V4T9_NICSY; transcription factor bHLH71-like | ||||
STRING | XP_009763212.1 | 4e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 7e-18 | bHLH family protein |