PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02798g05012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 473aa    MW: 52365.9 Da    PI: 8.3886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02798g05012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-11127152227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C+++ rtG C++G++C+F+H+p
  Niben101Scf02798g05012.1 127 GEPDCSYYIRTGLCRFGSTCRFNHPP 152
                               6899********************97 PP
2zf-CCCH406.6e-13172197227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C+++++tGtCk+G++CkF+H++
  Niben101Scf02798g05012.1 172 GQPECQYYLKTGTCKFGATCKFHHPK 197
                               5799********************96 PP
3zf-CCCH38.51.9e-12220243427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               ++C +++rtG+Ck+G++CkF+H++
  Niben101Scf02798g05012.1 220 AECAYYMRTGQCKFGSTCKFHHPQ 243
                               79********************97 PP
4zf-CCCH37.83.3e-12372398127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C+f+++tG Ck+G+ C+F+H++
  Niben101Scf02798g05012.1 372 PGQPECQFYMKTGDCKFGAVCRFHHPR 398
                               5789*********************96 PP
5zf-CCCH406.4e-13418444127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++lC f++r+G+Ck+G++CkF H++
  Niben101Scf02798g05012.1 418 PGEPLCIFYSRYGICKFGPSCKFDHPM 444
                               589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-5125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483125153IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8127152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5130153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4131151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629170198IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5170197IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10172197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4176196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596216244IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5216243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6218244IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10219243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4222242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596371399IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6371398IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8373398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5375401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5377401IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7417444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037417445IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10419444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5420444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4422442IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MVDWFIFVLS FFLFCFCVER KKRSFSFSFS FSLFPLLLLS EFPFFLSLFE VRFFCAFHQT  60
EERVINGNSG DGLLLIIIIM DFDAGISLSV TEGPSSLSPS LDQDTLWQMN LRSRESIESG  120
HYPVREGEPD CSYYIRTGLC RFGSTCRFNH PPNRKLAIAT ARMKGEYPER MGQPECQYYL  180
KTGTCKFGAT CKFHHPKDKA GIAGRVTLNV LGYPLRANEA ECAYYMRTGQ CKFGSTCKFH  240
HPQPSNMMVS LRGSPAYPSV PSATTPGQLS YPLSRGSFIP GTRWQAPSSY TPLIVPQGVV  300
SVPGFAYSGQ MGSVSSPEGQ QQTAGNIQVY GTSRSGDAVN MGSQGVTSPY RPASIPMGYY  360
ALQGENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPPPDCMLS PIGLPLRPGE  420
PLCIFYSRYG ICKFGPSCKF DHPMTVFTYS ISASSPTDAP AVQRLLGSSS GTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793876.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_016438819.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S3XG870.0A0A1S3XG87_TOBAC; zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7XW870.0A0A1U7XW87_NICSY; zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_009793876.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-179zinc finger protein 1