PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02786g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 303aa    MW: 33633.8 Da    PI: 7.6263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02786g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-071157447
                              S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                              W++eE++ + +a++++  +    +W++ a+ ++ ++t  ++k ++q +
  Niben101Scf02786g00005.1 11 WSKEEEKAFENAIAMHWVEdseqQWEKFAAVVP-TKTIDEIKRHYQLL 57
                              *****************99**************.***********965 PP
2Myb_DNA-binding38.92e-12134178347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Niben101Scf02786g00005.1 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                               7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004760IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-4755IPR009057Homeodomain-like
PROSITE profilePS500906.1911158IPR017877Myb-like domain
SuperFamilySSF466893.18E-81164IPR009057Homeodomain-like
CDDcd001671.52E-61158No hitNo description
PfamPF002494.6E-61156IPR001005SANT/Myb domain
PROSITE profilePS5129416.873127183IPR017930Myb domain
SuperFamilySSF466896.9E-17129184IPR009057Homeodomain-like
SMARTSM007172.3E-10131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-17131181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-11132177IPR009057Homeodomain-like
CDDcd001671.03E-9134179No hitNo description
PfamPF002497.5E-11134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSVLDLPSEL WSKEEEKAFE NAIAMHWVED SEQQWEKFAA VVPTKTIDEI KRHYQLLVDD  60
VAAIDAGHVP LPNYIGEESS SSSIKETNLG YSGSSDRRSN CGYVNGFSGP THDPIGHSGK  120
GNSKAEQERR KGIPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITSI NGGDVSTHQA PITGQQPIPN PSNPAALGPN IKHRNQPNMH  240
GYGMYGAPMG HPVAAPPSHM ASAVGTPVML PHGHHPPYVL PVAYSIPPPH PPPMHYFYMF  300
LRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244152.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotB8A9B24e-83MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH594e-83MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A1J6IJP40.0A0A1J6IJP4_NICAT; Transcription factor myb1r1
STRINGXP_009592237.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-78MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]