PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02785g02014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 374aa MW: 42899.1 Da PI: 9.0534

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02785g02014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	188	200	1	13
EEETTTTEEESSH CS zf-C2H2 1 ykCpdCgksFsrk 13 + C++C+k+F+rk Niben101Scf02785g02014.1 188 FACNICNKTFNRK 200 78*********98 PP
2	zf-C2H2	16.5	2.3e-05	256	278	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ Niben101Scf02785g02014.1 256 FSCRKCGKTFAVKGDWRTHEKNC 278 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.09E-5	238	276	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.8E-4	243	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	256	276	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGIRNNYSHI VQDMDLCFQV PNFIEWLKPL SNSSSSPSRS NSSSSSSSAI TQPQEVMVEP 60 ENPMTFLKLP LLYSPQEVQD MNINQAVQCL PLLNKLTDPK KERKQEDIGE SKKKWCEVKE 120 EKMEKVTVSL HIGLPDCCDV EAKPPFSFKQ EEENREKISS KTKCCNFNSE SRFWIPTPAQ 180 ILVGPMQFAC NICNKTFNRK GPESLRGTQP AAMLRLPCYC CALGCKNNIN HPRAKPLKDF 240 RTLQTHYKRK HGTKAFSCRK CGKTFAVKGD WRTHEKNCGK LWYCNCGSDF KHKRSLKDHI 300 RKCGKTFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIRSFGNGHS PHPSLNNDYF 360 NKECTSDDEV NLTN

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGIRNNYSHI VQDMDLCFQV PNFIEWLKPL SNSSSSPSRS NSSSSSSSAI TQPQEVMVEP  60
ENPMTFLKLP LLYSPQEVQD MNINQAVQCL PLLNKLTDPK KERKQEDIGE SKKKWCEVKE  120
EKMEKVTVSL HIGLPDCCDV EAKPPFSFKQ EEENREKISS KTKCCNFNSE SRFWIPTPAQ  180
ILVGPMQFAC NICNKTFNRK GPESLRGTQP AAMLRLPCYC CALGCKNNIN HPRAKPLKDF  240
RTLQTHYKRK HGTKAFSCRK CGKTFAVKGD WRTHEKNCGK LWYCNCGSDF KHKRSLKDHI  300
RKCGKTFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIRSFGNGHS PHPSLNNDYF  360
NKECTSDDEV NLTN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795232.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1
Refseq	XP_016484426.1	0.0	PREDICTED: zinc finger protein WIP3-like
Swissprot	Q9SGD1	3e-94	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A1S4B6C3	0.0	A0A1S4B6C3_TOBAC; zinc finger protein WIP3-like
TrEMBL	A0A1U7XT40	0.0	A0A1U7XT40_NICSY; protein TRANSPARENT TESTA 1
STRING	XP_009795232.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	2e-90	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]