PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02775g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 245aa    MW: 27272.5 Da    PI: 4.8237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02775g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-19136186255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Niben101Scf02775g00001.1 136 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAFRMRG 186
                               8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-31135194No hitNo description
Gene3DG3DSA:3.30.730.102.4E-31135194IPR001471AP2/ERF domain
PfamPF008472.1E-13136186IPR001471AP2/ERF domain
SMARTSM003801.4E-38136200IPR001471AP2/ERF domain
PROSITE profilePS5103223.788136194IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-23136196IPR016177DNA-binding domain
PRINTSPR003674.8E-10137148IPR001471AP2/ERF domain
PRINTSPR003674.8E-10160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMYRNCELEN DFAILESIRF HLLEDWEAPL TSSDNSTTSD LSRSNSIESN MFPNCLSNEF  60
DAADTLLYDI LNEGAGYGFE PASDFTIPNV KLEPEISIQS PEIWNLPEFV TPPETKTEVE  120
MESPAVTTPP PPRGKHYRGV RVRPWGKFAA EIRDPAKNGA RVWLGTYETA EDAALAYDKA  180
AFRMRGSRAL LNFPLRVNSG EPEPIRVGSK RSSMSPEYSS SSSKSSASTP KRRKKVSQGT  240
ELAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-42133201270ATERF1
3gcc_A5e-42133201270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235PKRRKKV
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252147.11e-154PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803374e-59EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A1J6INY31e-153A0A1J6INY3_NICAT; Ethylene-responsive transcription factor 1a
STRINGXP_009617605.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-47ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]