PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02730g01028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27002.1 Da PI: 5.0499 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.5 | 2.3e-13 | 45 | 74 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 e++++LAkklgL+ rqV vWFqNrRa++k Niben101Scf02730g01028.1 45 PERKTQLAKKLGLQPRQVAVWFQNRRARWK 74 57899************************9 PP | |||||||
2 | HD-ZIP_I/II | 98.9 | 4.7e-32 | 39 | 111 | 20 | 92 |
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +++ eperK++la++LglqprqvavWFqnrRAR+ktk lE+dy++Lk++yd+l ++ ++++k++e+L++e+ Niben101Scf02730g01028.1 39 RRTSWEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKTLERDYDQLKSSYDSLLSDFDSMRKDNEKLKAEVV 111 556789***************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-12 | 34 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.1E-4 | 36 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-13 | 43 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-10 | 45 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.18E-12 | 45 | 76 | No hit | No description |
PROSITE profile | PS50071 | 13.119 | 46 | 76 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.3E-6 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-6 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-16 | 76 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGSGHIFFDP SCHGNMLFLG NSDPVFRGTC TCWRRALRRR TSWEPERKTQ LAKKLGLQPR 60 QVAVWFQNRR ARWKTKTLER DYDQLKSSYD SLLSDFDSMR KDNEKLKAEV VSLMEKLQGK 120 VVGGAGITNE KCEVLEVDAL TLQVKVKAED RLSSGSGGSA VVDEHSPQLV DSGDSYFHTG 180 HIEEYPIGAG GCINIPPPMD SLQSEEDDGS DDGGGHGYFS NVFVAAEEQQ HEEGEPIGWF 240 WS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622827.1 | 1e-143 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Refseq | XP_016509870.1 | 1e-143 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 6e-57 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S4D8T6 | 1e-142 | A0A1S4D8T6_TOBAC; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_009622827.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-45 | homeobox 1 |
Publications ? help Back to Top | |||
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