PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02658g03021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26911.6 Da PI: 8.0587 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Niben101Scf02658g03021.1 14 KGAWTKEEDERLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 22.1 | 3.6e-07 | 67 | 94 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 rg++T+eEdel+++++ +lG++ k+ +r Niben101Scf02658g03021.1 67 RGNFTEEEDELIIKLHSLLGNK-RKLLSR 94 89*******************9.777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.313 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.5E-23 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 5.006 | 62 | 102 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-10 | 65 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 54 | 66 | 155 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKRK LLSRGIDPTT HRLMGEPTGT QKMTTISFAA 120 DDQEQKIKIS PEFETMNKEE KDHEIQERCP DLNLELRISP PHNQQNQLDH HQRANFLCFT 180 CSLGIQNSKD CSCSSKNSNG NGCSNIINMN MNISGYDFLG LKNNGLVLDY RTLETK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-16 | 13 | 88 | 26 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764613.1 | 1e-160 | PREDICTED: myb-related protein 308-like | ||||
Refseq | XP_016468960.1 | 1e-160 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-92 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A1S3ZWZ4 | 1e-159 | A0A1S3ZWZ4_TOBAC; myb-related protein 308-like | ||||
TrEMBL | A0A1U7VE24 | 1e-159 | A0A1U7VE24_NICSY; myb-related protein 308-like | ||||
STRING | XP_009764613.1 | 1e-159 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-78 | myb domain protein 4 |
Publications ? help Back to Top | |||
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