PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02657g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 321aa    MW: 36518.1 Da    PI: 10.3416
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02657g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.11.9e-39822322133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssss 69 
                               ++k+ r ski T++g+RdRRvRls+ +a +fFdLq++LGfdk+skt++WL++ +k ai elt+                  +   
  Niben101Scf02657g01004.1  82 PKKRERPSKIVTSQGPRDRRVRLSIAIAQKFFDLQEMLGFDKPSKTLDWLFTHSKLAIEELTNWsthqdhgskiagatksnC--- 163
                               6899***********************************************************9555444444433222111... PP

                       TCP  70 a...sec.eaesssssasnsssg...........kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                   ++c +++           +           ++ k  ak+kk+ k++a+ ++l + esrakar+rarert +km  +
  Niben101Scf02657g01004.1 164 DevaKDCaSEW-----------EdltittnedleRKPKRLAKEKKEVKDEATDHALVArESRAKARERARERTIKKMWSR 232
                               02223333333...........0333444444547777777999999999999998888*****************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.85882142IPR017887Transcription factor TCP subgroup
PfamPF036348.3E-3883230IPR005333Transcription factor, TCP
PROSITE profilePS5137010.597211228IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MFPASNSTGN PPPNPSLSFH SSSPFLGLNG NQILLHHYQN QFSSHHFAKN TTLSANNIIN  60
SPNYNQNHSG NSLRSFPINK KPKKRERPSK IVTSQGPRDR RVRLSIAIAQ KFFDLQEMLG  120
FDKPSKTLDW LFTHSKLAIE ELTNWSTHQD HGSKIAGATK SNCDEVAKDC ASEWEDLTIT  180
TNEDLERKPK RLAKEKKEVK DEATDHALVA RESRAKARER ARERTIKKMW SRIETSQRST  240
SQLFRSSFFL KKDIREMEEQ FCKNIQVSQE VANKRIIQGS GVTKIKIKPS LVLDFYPNFS  300
APIESSTTYY GSSSFNAEKL G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803760.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_016462466.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1S3ZDU90.0A0A1S3ZDU9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBLA0A1U7YYF60.0A0A1U7YYF6_NICSY; transcription factor CYCLOIDEA-like
STRINGXP_009803760.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-23TCP domain protein 12