PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02571g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 341aa    MW: 38251.8 Da    PI: 6.2546
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02571g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1366107346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               ++T++E+el++++++  G++ W+ Ia+ ++ gRt++++k+ w++
  Niben101Scf02571g01008.1  66 SFTPQEEELIIKLHATIGSR-WSIIAQQIP-GRTDNEVKNLWNT 107
                               79******************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.41160IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-1811105IPR009057Homeodomain-like
PROSITE profilePS500905.8891758IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-111765IPR009057Homeodomain-like
PROSITE profilePS5129418.62859113IPR017930Myb domain
SMARTSM007173.0E-1163111IPR001005SANT/Myb domain
CDDcd001671.05E-866109No hitNo description
PfamPF002491.8E-1266107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2166113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRPHCCSDN RRCNWTEEDA NTSAFVSKHG IGTWTAMSKK SGTGKCGRSQ KNKWSNRLKT  60
DIKEDSFTPQ EEELIIKLHA TIGSRWSIIA QQIPGRTDNE VKNLWNTKLK KKLSAMGIDP  120
VTHKPFSQIL TDYGNIGGFP KARTRFVSLN RELKGAFMST PEQFQYPLER FPNFNSHCMT  180
TIRLQKTETS EDCFLSNNQP PVDLLSELQA IQFVTEACNN NSSKAIFSYT NPITDCSLSS  240
PLSSSSSSSA SHSLTKNQVN WCDYLLDDAF QEDMTLNVDE KLVSGAAQEY RQNNAPTMKD  300
FEATLSTKGT SPSSSSFVEA MLECENEMFL NFPGLSEDPF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-201511310108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800479.10.0PREDICTED: myb-related protein 315-like
RefseqXP_016507340.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A1S4D1M50.0A0A1S4D1M5_TOBAC; transcription factor MYB35-like
TrEMBLA0A1U7YML80.0A0A1U7YML8_NICSY; myb-related protein 315-like
STRINGXP_009800479.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-44MYB family protein