PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02565g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 399aa    MW: 44839.9 Da    PI: 7.035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02565g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.7e-23126185258
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                               +Dgy+WrKYGqK++ g+++pr YYrC+ +   +C ++k v+r +++p v+e++Y ++H +
  Niben101Scf02565g02003.1 126 EDGYSWRKYGQKHILGAKYPREYYRCARRhlsKCIATKMVKRGDTEPPVFEVIYGESHSC 185
                               7**************************98889**************************98 PP
2AP2445.4e-14338386355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++  g+W AeIrdp+    r +r++lg+f+   +Aa a++ a+ +++g
  Niben101Scf02565g02003.1 338 YRGVRQRP-FGKWTAEIRDPK----RaARVWLGTFDNSHDAAVAYDDAAYRFYG 386
                               9*******.9*********83....57***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-22116187IPR003657WRKY domain
PROSITE profilePS5081118.119120184IPR003657WRKY domain
SuperFamilySSF1182908.37E-21122187IPR003657WRKY domain
SMARTSM007742.1E-26125187IPR003657WRKY domain
PfamPF031061.1E-21126185IPR003657WRKY domain
PROSITE profilePS5103222.563337394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-28337395IPR001471AP2/ERF domain
SMARTSM003801.1E-27337399IPR001471AP2/ERF domain
CDDcd000189.95E-19337395No hitNo description
SuperFamilySSF541713.07E-19337395IPR016177DNA-binding domain
PfamPF008473.1E-8338386IPR001471AP2/ERF domain
PRINTSPR003673.8E-8338349IPR001471AP2/ERF domain
PRINTSPR003673.8E-8360376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKQDVCQY LSVEILSSYD KALSLLNGTA  60
LSVMSKGKQI INSAPSSSTD KLESPHLPVD CSTKSSDRPS NSRKRKMISR RTEYLHARSG  120
EEVPPEDGYS WRKYGQKHIL GAKYPREYYR CARRHLSKCI ATKMVKRGDT EPPVFEVIYG  180
ESHSCGQESK NQNEELPAPV LTVLTKEKQS EEVGRGGEIS ESDIADMVST PNNSFNNSST  240
GLVFSSNSNS SSLFNTANSD FMPTPTSSSH PDWNSLSLDD YTTSLTAFLN DEFENVSCTY  300
KGDNFISTPT SDRNLSLDVT TSLTTLSNSA PENARHIYRG VRQRPFGKWT AEIRDPKRAA  360
RVWLGTFDNS HDAAVAYDDA AYRFYGKNAK LNFPERHIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21338396362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261384.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
RefseqXP_019261385.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
TrEMBLA0A314LAA10.0A0A314LAA1_NICAT; Putative wrky transcription factor 41
STRINGXP_009793242.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-30WRKY family protein