PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02541g10024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 351aa    MW: 39459.6 Da    PI: 7.9505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02541g10024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-06426326
                              S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                              ++lC+ffa  G C  G+ C F+H+
  Niben101Scf02541g10024.1  4 RVLCKFFAH-GACLKGEHCEFSHD 26
                              89***6666.*************5 PP
2zf-CCCH23.69.3e-083454526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Niben101Scf02541g10024.1 34 VCTYYQK-GACAYGSRCRYEHV 54
                              5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089128IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6952956IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-53055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53253IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-53454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0013453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.685132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.77133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.0E-9194259IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.39E-11194264No hitNo description
CDDcd001620.00318200259No hitNo description
PfamPF000974.5E-6201257IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001846.6E-7201257IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.209201258IPR001841Zinc finger, RING-type
PROSITE patternPS005180225234IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.197287316IPR000571Zinc finger, CCCH-type
SMARTSM003560.067287315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSQRVLCKFF AHGACLKGEH CEFSHDWKTS PNNVCTYYQK GACAYGSRCR YEHVKLSRSQ  60
PSAQSSAQSQ QYLLSSYVST NVAPGAGAQS AGLVPGIYTE YSASSKLSWN QNSELHDTLD  120
NDDMIELRSI SPADRSICAF AAAGNCHRGE KCPHIHGNLC PTCGKHCLHP FRHQEREDHI  180
NTCENRQKHI DLLKRSQEIE CSVCLECVLS KSTAAERKFG ILSECDHPFC ISCIRNWRGS  240
SSSGMDVNSA LRACPICRKL SYFIIPSVIW YFTKEEKEKI VDSYKTKLRS IDCKHFDFGS  300
GTCPFGTSCF YRHQYRDGRL EEVVLRHLGS EDGNTVIAKD ISRKQILPLD A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239556.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-157C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1J6KDN00.0A0A1J6KDN0_NICAT; Zinc finger ccch domain-containing protein 69
STRINGXP_009783087.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-142C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]