PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02540g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 515aa MW: 56365.8 Da PI: 6.2547 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.7 | 1.1e-11 | 141 | 197 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Niben101Scf02540g00013.1 141 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 197 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.2 | 5.4e-15 | 240 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Niben101Scf02540g00013.1 240 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 291 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-15 | 141 | 206 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.61E-19 | 141 | 207 | No hit | No description |
Pfam | PF00847 | 3.7E-9 | 141 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 142 | 205 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-12 | 142 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-23 | 142 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 143 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.67E-25 | 240 | 301 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 240 | 301 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-10 | 240 | 291 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 241 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 241 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-34 | 241 | 305 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MDMDSSENWL GFSLSNINNN NNSINLPSNN SSELCLFQAF NSNPNSGVEE NGKGPPKLED 60 FLGGSSTITA AATEVCWENP ATTTTTTTTS LCEYGSELKT IAASFLRSFS TDQNISQNKQ 120 LTVVALPPAK KAVETFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK 180 EEKAARAYDL AALKYWGPTT TTNFPVLDYE KELEEMKSMT RQEFVASLRR KSSGFSRGAS 240 IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI 300 SRYDVKSIAS SNLPVGGMNN KSKTSSESAS ESSKNVEANR SDDHISSASS APFSSQAPNM 360 VNLGFGLPVK QDNTDFWSIL GYTNDPNNGS KNPSANSTFF HGPPDGTSTQ AQGTTIFSMD 420 LPATTTSLNE VNNSQVIFNE EGYYHQQQEQ QCGSCSTITS VPSDISMALN SNATTTTTTL 480 DGSNFGNWIP PPLHSFQTSA KNNLAPYQTP IFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770282.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-140 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1U7VQU8 | 0.0 | A0A1U7VQU8_NICSY; AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
STRING | XP_009770281.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-130 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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