PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02537g21009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 32213.6 Da PI: 4.6271

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02537g21009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	4.9e-20	54	106	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ +q+++Le+ Fe +++++ e++ ++A++lgL+ rqV +WFqNrRa++k Niben101Scf02537g21009.1 54 KRRLKVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWK 106 557899**********************************************9 PP
2	HD-ZIP_I/II	123.9	7.6e-40	53	142	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 kkrrl+ +qv++LE+ Fe ++kL+perKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y++l+ + +++e+e++ Niben101Scf02537g21009.1 53 KKRRLKVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWKTKQLERDYNILKANYETLQLNYSKVEQEKQG 137 9************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 L +e+ Niben101Scf02537g21009.1 138 LINEI 142 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.34E-19	49	110	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-19	51	112	IPR001356	Homeobox domain
CDD	cd00086	2.35E-17	53	109	No hit	No description
PROSITE profile	PS50071	16.601	53	108	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-17	54	106	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.2E-20	59	106	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-5	79	88	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	83	106	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	88	104	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.1E-12	108	142	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MKRFSFSDSS GKLLYPPEEK NTENLAYSAE FQAMLDGLED EDGIEESGCV TGKKRRLKVD 60 QVQALEKIFE VDNKLDPERK VKIAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYNILKAN 120 YETLQLNYSK VEQEKQGLIN EIGEENSTVF QRPQELNPRN YEVNNKLNSD IVDSKDGSSD 180 SDSSGVMNEE NYNSTLNYQP LMPKVSSYNA LDHLSLSSTT YTQLLDPRAS STSSMRDYHQ 240 QQQVGKMEEQ IGFTTEDSCN IYSVDQAPNL YWYLSDHRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	KKRRLK
2	100	108	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264078.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A314L585	0.0	A0A314L585_NICAT; Homeobox-leucine zipper protein athb-5
STRING	PGSC0003DMT400079230	1e-146	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12939	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	9e-43	homeobox protein 16