PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02509g07006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 459aa    MW: 52044.1 Da    PI: 9.2028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02509g07006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67e-06326226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                              k++lC+ f+  G C  G+ C F+H+
  Niben101Scf02509g07006.1  3 KRVLCK-FFVHGACLKGEYCEFSHD 26
                              99****.7777*************5 PP
2zf-CCCH22.12.7e-073454526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Niben101Scf02509g07006.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
                              5******.***********997 PP
3zf-CCCH21.54.2e-07139159526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+  a+ G C++G++C+++Hg
  Niben101Scf02509g07006.1 139 ICS-LAAAGNCPRGEKCPYIHG 159
                               677.8999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.544128IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1832956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-43453IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084134161IPR000571Zinc finger, CCCH-type
SMARTSM003560.08136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4139159IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4140159IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.05E-12195267No hitNo description
Gene3DG3DSA:3.30.40.103.0E-9196262IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.45E-5202262No hitNo description
PROSITE profilePS5008912.268203261IPR001841Zinc finger, RING-type
PfamPF000972.3E-6203260IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.3E-6203260IPR001841Zinc finger, RING-type
PROSITE patternPS005180227236IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKASQQH  60
SPPSSSASAQ HLHSDSSPTT LSPGMLADGV GLSAEYLNSG RPFYPPNQAA WSENSEHHHV  120
EDIENFVELK RINRANQSIC SLAAAGNCPR GEKCPYIHGD LCPICAKHCL HPFRPQEIEE  180
HMKTCEKRQK HLDLLKHSQE IECCVCLERV LSKTTAAERK FGILSECDHP FCISCIRNWR  240
SGSPSSGIDI NSTFRTCPLC RKLSYFVIPS VIWYSTKEEK QDILDSYKAK LSINTVMAVW  300
RKWYCVILVL KMEAHANSPG DMRWSSRCRH SVPGRGHGYI YIYTQIDYQV FYARQTRKKK  360
MHSVKEKVSN AAAAGKEHVL KAKAKEKFFI SILEPSRAVI DMILLNSIPK LPYKVPVFTP  420
IIQDLSQMPD TLRPKLNGPS IVKPSKPQSP KIKAAQKVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779788.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X4
SwissprotE0X9N41e-119C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1U7WMH20.0A0A1U7WMH2_NICSY; zinc finger CCCH domain-containing protein 69-like isoform X4
STRINGXP_009779785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-111C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]