PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02509g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 744aa MW: 80691.8 Da PI: 6.6835

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02509g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.2e-07	326	346	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Niben101Scf02509g00004.1 326 PCPEFRK-GACRRGDMCEYAHG 346 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.8E-17	49	181	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.7E-18	53	222	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-10	88	170	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.07E-15	100	179	No hit	No description
PROSITE profile	PS50297	15.99	101	203	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0067	101	131	IPR002110	Ankyrin repeat
PRINTS	PR01415	7.2E-5	102	117	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.995	136	171	IPR002110	Ankyrin repeat
SMART	SM00248	1.3E-4	136	168	IPR002110	Ankyrin repeat
PRINTS	PR01415	7.2E-5	155	169	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	321	347	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	326	348	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	326	346	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	354	384	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	68	356	379	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
METISLSSFG DFSSTALAEA CALAQKDPIL VHPPTNPLLI LNLGITKLTV ETEDSFSSLL 60 ELAANNDIEG FKRSLERDAS AIDEVGLWLV RKKGAKQIVN EERTPLMVAA TYGSLNVLKL 120 IISNPVVDVN RVCGPNKCTA LHCATSGGSI NAVEVVKFLL SAGADPNIED SNGQRPVDVI 180 VIPPKLHGAR ASLEELLLKS SSDGSVGECK LRVSVTTSNG SSPDLSSSPE NGSPFSPSDS 240 LCSPMASKFS DIPANSAPEK KEYPIDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW 300 TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR 360 LCKDGTSCAR RVCFFAHTTE ELRPLYVSTG SAVPSPRSAA SAATVMDMAA ALNLFPASPS 420 AHSVMSPPAF NQPMSPTANG MSHPSAPWPQ PNVPALHLPG SNLQSSRLRS SLSARDIPPE 480 DCNMLHDFDA QQLVLNDMAC YSQPHPNSLN RSGRSNTLTP SNLEELFSAE ITSSPRYSDQ 540 AAASGVFSPS HKSAFFNQFQ QQQSMLSPIN TNVFSPKNME HPLLQASFGV SSPRRMSPRS 600 MEPISPMSAR LSAFALREKQ HQQLRSLSSR DLGSYNASIV GSPVGNSWSN WGSPTGKVDW 660 SVNGSGVGRM RRSSSFEQLN NGEEPDLSWV QSLVKESPSE MKEKQAAPIS GTAPSGESLS 720 KVDSVDHSVL GAWLEQMQLD QLVA

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

METISLSSFG DFSSTALAEA CALAQKDPIL VHPPTNPLLI LNLGITKLTV ETEDSFSSLL  60
ELAANNDIEG FKRSLERDAS AIDEVGLWLV RKKGAKQIVN EERTPLMVAA TYGSLNVLKL  120
IISNPVVDVN RVCGPNKCTA LHCATSGGSI NAVEVVKFLL SAGADPNIED SNGQRPVDVI  180
VIPPKLHGAR ASLEELLLKS SSDGSVGECK LRVSVTTSNG SSPDLSSSPE NGSPFSPSDS  240
LCSPMASKFS DIPANSAPEK KEYPIDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW  300
TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR  360
LCKDGTSCAR RVCFFAHTTE ELRPLYVSTG SAVPSPRSAA SAATVMDMAA ALNLFPASPS  420
AHSVMSPPAF NQPMSPTANG MSHPSAPWPQ PNVPALHLPG SNLQSSRLRS SLSARDIPPE  480
DCNMLHDFDA QQLVLNDMAC YSQPHPNSLN RSGRSNTLTP SNLEELFSAE ITSSPRYSDQ  540
AAASGVFSPS HKSAFFNQFQ QQQSMLSPIN TNVFSPKNME HPLLQASFGV SSPRRMSPRS  600
MEPISPMSAR LSAFALREKQ HQQLRSLSSR DLGSYNASIV GSPVGNSWSN WGSPTGKVDW  660
SVNGSGVGRM RRSSSFEQLN NGEEPDLSWV QSLVKESPSE MKEKQAAPIS GTAPSGESLS  720
KVDSVDHSVL GAWLEQMQLD QLVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247613.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1J6IX79	0.0	A0A1J6IX79_NICAT; Zinc finger ccch domain-containing protein 30
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]