PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02475g08001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 445aa    MW: 50054.2 Da    PI: 4.5529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02475g08001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.81.6e-134415028128
                       NAM  28 leleevikevdiykv.ePwdLp.kkvkaeekew.yfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvf 108
                               +++ ++i+  d+y + +Pwd+  +++ +e++++ yfF+k +++++ g r +r  +  g Wk   k+k+v++ +++lvg kk++ +
  Niben101Scf02475g08001.1  44 FSC-DHIRVEDLYGIkKPWDIFeNNFLGEDTKVnYFFTKLKSAKQGGLRFSRgLIGGGCWKGLDKSKPVFK-GSKLVGFKKSFRY 126
                               444.6799999999868****6445555555445******************999***************9.9************ PP

                       NAM 109 ykg....rapkgektdWvmheyrl 128
                                ++    +  + ++  W m+ey+l
  Niben101Scf02475g08001.1 127 QEKdsctDGDQVNNIVWNMKEYSL 150
                               *542111333444778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.59815177IPR003441NAC domain
SuperFamilySSF1019418.76E-1645177IPR003441NAC domain
PfamPF023653.0E-646150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MNSSKPAPYA ASVSFMIQFR AKPEENPVPS PSNHTLTRLG HKIFSCDHIR VEDLYGIKKP  60
WDIFENNFLG EDTKVNYFFT KLKSAKQGGL RFSRGLIGGG CWKGLDKSKP VFKGSKLVGF  120
KKSFRYQEKD SCTDGDQVNN IVWNMKEYSL DDNILKVLRQ RNSIQYENFV LCCIKRKSVH  180
DHDHKELGDH MEIAASGNNV VAVMNAMLLT TQEHELDYVT SSSDDQGTSF HDLCPSNQFS  240
SSEHNNVFQL QQDQNIEEMA PSAQSHVEYV ESSSEEGTTS NQFTYSFDNN DFQLQQDNSI  300
ECDHRDTVPS TLAEMMKNID HVDTKVYEYI GRLLAEKSNT AESQLPICID ESGYEQNIIR  360
PTAQGSSTAG FVSDQGSLQQ VHNIEERAPS TFTDMLTSSD YHAEPSLVIS SDECFTMEES  420
LGSDDDDVIA ADLSWPSLDD RLPTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786835.10.0PREDICTED: NAC domain-containing protein 19-like
RefseqXP_016500123.10.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A1S4CG560.0A0A1S4CG56_TOBAC; NAC domain-containing protein 19-like
TrEMBLA0A1U7XK200.0A0A1U7XK20_NICSY; NAC domain-containing protein 19-like
STRINGXP_009786835.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10426625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-11NAC domain containing protein 53