PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02439g00023.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 303aa MW: 34788.1 Da PI: 4.3763

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02439g00023.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k Niben101Scf02439g00023.1 72 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYK 125 45578899*********************************************9 PP
2	HD-ZIP_I/II	118.6	3.5e-38	71	156	1	86
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke+ Niben101Scf02439g00023.1 71 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKASFDKLKDDYDTLFKENY 155 69******************************************************************************99986 PP HD-ZIP_I/II 86 e 86 + Niben101Scf02439g00023.1 156 D 156 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	57	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	67	127	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	70	131	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-15	72	125	IPR001356	Homeobox domain
CDD	cd00086	9.86E-17	72	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-18	75	134	IPR009057	Homeodomain-like
PRINTS	PR00031	5.6E-6	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-6	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-8	128	154	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.8E-8	155	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEARRVNEDS NMTTTNTVLP SEVLHNLWMS NSSPSFHDGR GEISKERSFF SPVDKEETSN 60 DDYDSCFHQP EKKRRLLPNQ VQFLEKSFEV DNKLEPERKV QLAQELGLQP RQIAIWFQNR 120 RARYKTKLLE KDYDVLKASF DKLKDDYDTL FKENYDVLKA SFDKLKDDYD TLVKENENLR 180 NEKGKENSEQ NEPIISQVDA EEAQKASPNV VTSEGPSIQK VVCKQEDASS TKSDVMDSDS 240 PHYTDGNHSS NAFEPEPSDF SQDEDDNLSK SFLCFPEIGD QIQANSCNLG FQIEDQPFAT 300 VNL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230957.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A314KIA2	1e-179	A0A314KIA2_NICAT; Homeobox-leucine zipper protein hat5
STRING	XP_009610614.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-40	homeobox 1