PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02436g03009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 832aa    MW: 92281.8 Da    PI: 4.814
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02436g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-2098153156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Niben101Scf02436g03009.1  98 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 153
                               688899***********************************************998 PP
2START153.12.3e-482995251206
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWde 74 
                               ela++ ++elvk+ la++p+W++      e++n +e+ + f+   +        ++ea r s+vv+m++ +lv  lld + +W e
  Niben101Scf02436g03009.1 299 ELALSSMDELVKMCLAADPLWTRTTdsrkEILNVEEYSRLFPWPIGikqnsneLRIEATRSSAVVIMNSITLVDALLDAN-KWIE 382
                               578999*****************998889999999999999766668899999***************************.**** PP

                               T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                     START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRael 147
                                ++    +a+t++v+++g      g lqlm++e+qal+plvp R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   ++
  Niben101Scf02436g03009.1 383 LFPsiisRAKTIQVVTTGvsghasGSLQLMFMEMQALTPLVPtRECYFLRYCQQnVEEGTWAIVDFPLDSLHNNF-PAPFPYFKR 466
                               ******************************************************99**************99998.58888888* PP

                               SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               +pSg++i++++ng+s+vtw e+++++++ + +++++ v+sg+a+ga++w+  lqrqce+
  Niben101Scf02436g03009.1 467 RPSGCIIQDMPNGYSRVTWAEQAEVEENPVNQIFNQYVSSGMAFGAQRWLGILQRQCER 525
                               *********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-2179153IPR009057Homeodomain-like
SuperFamilySSF466892.42E-1981156IPR009057Homeodomain-like
PROSITE profilePS5007116.74695155IPR001356Homeobox domain
SMARTSM003895.8E-1996159IPR001356Homeobox domain
CDDcd000865.11E-1898156No hitNo description
PfamPF000461.1E-1798153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084842.54290528IPR002913START domain
SuperFamilySSF559613.57E-31291527No hitNo description
CDDcd088755.22E-112294524No hitNo description
PfamPF018523.5E-40299525IPR002913START domain
SMARTSM002343.0E-32299525IPR002913START domain
SuperFamilySSF559612.33E-16551721No hitNo description
SuperFamilySSF559612.33E-16754793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGNAVSS DSLYSSPIQN PNFNFMAMGG NNLPFNIFPP NIIPKEENGL  60
LKSKEEMDSG SGSEHIDGMS GNELESEQQQ QQQQPGKKKR YHRHTARQIQ EMEALFKECP  120
HPDDKQRLKL SQDLGLKPRQ VKFWFQNRRT QMKAQQDRAD NVILRAENDN LKNENYRLQA  180
ALRSIMCPTC GGPAMLGEMG YDEQQLRLEN ARLKEEFERV CCLVSQYNGR GPMQGIGPTT  240
PLLPPSLELD MSVNFSRKFE EPMANCSTEM VPVPFMPENN SQFSGGPIIL EEEKSIAMEL  300
ALSSMDELVK MCLAADPLWT RTTDSRKEIL NVEEYSRLFP WPIGIKQNSN ELRIEATRSS  360
AVVIMNSITL VDALLDANKW IELFPSIISR AKTIQVVTTG VSGHASGSLQ LMFMEMQALT  420
PLVPTRECYF LRYCQQNVEE GTWAIVDFPL DSLHNNFPAP FPYFKRRPSG CIIQDMPNGY  480
SRVTWAEQAE VEENPVNQIF NQYVSSGMAF GAQRWLGILQ RQCERLASLM ARNISDLGVI  540
PSPEARKSLM NLAQRMIKTF CMNISPSCGQ SWTALSDSLE DTVRITTRKA TEPGQPNGLI  600
LCAVSTTWIP YNHFQVFDLL RDECRRAQLD VLSNGNSLHE VAHIANGSHP GNCISLLRVN  660
VASNSSQSVE LMLQESCTDD SGSIVVYTTV DVDAIQLAMN GEDPSCIPLL PLGFVVTPVG  720
QINNCDTNIN PSEANSGAQS SEKSNLSIEE SESGGCLLTV GLQVLASTIP TAKLNLSSVT  780
AINHHLCNTV QQITAALSAF YPEPAITVPS PQLQPQQQQL EPKQAVEISS NS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786380.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_009786381.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_009786382.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1U7XIT30.0A0A1U7XIT3_NICSY; homeobox-leucine zipper protein HDG5 isoform X1
STRINGXP_009786380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7