PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02420g07005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 158aa MW: 18153.2 Da PI: 9.3515 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.6e-10 | 4 | 52 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h +Er+RR+++ + + Lr+llP + ++K s ++ +Av+YIk+ q Niben101Scf02420g07005.1 4 VMHRDMERQRRQEMTTLDSSLRSLLPLQ----CGKRSVSDHMHEAVNYIKQVQ 52 78*************************7....7******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.01E-6 | 1 | 53 | No hit | No description |
PROSITE profile | PS50888 | 11.687 | 1 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-10 | 4 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-7 | 4 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-8 | 5 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MKEVMHRDME RQRRQEMTTL DSSLRSLLPL QCGKRSVSDH MHEAVNYIKQ VQANMNELER 60 KREKLKMVPN SSPRGMVDII SSIIVSSDCV TVSPCYNGGV EILINGKCRR ESLPLSRILQ 120 ELLKEGLDVV SCVSAKINQH SRHRIQQLIP TIYIEILR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587651.1 | 5e-76 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A1S4AYZ3 | 1e-73 | A0A1S4AYZ3_TOBAC; transcription factor bHLH118-like | ||||
STRING | XP_009587651.1 | 2e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 5e-24 | bHLH family protein |