PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02407g04008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 206aa    MW: 22970.1 Da    PI: 7.001
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02407g04008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.21.9e-191501901959
                               SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               + prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
  Niben101Scf02407g04008.1 150 REPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 190
                               68**************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.1E-11144191IPR003657WRKY domain
SuperFamilySSF1182902.09E-15148191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-17148190IPR003657WRKY domain
PfamPF031068.8E-14149189IPR003657WRKY domain
PROSITE profilePS5081117.832152192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MERGEGRELN NYELPVSFSA PHTNNIHDLG FVQFADHNQM MSFLAPPSSH SQLSSQIPQP  60
LQAAAATTVT PPTTSTNATA AAASNNISSA LGFNHTELVN RPWNNDQVET LDPKVVNDEN  120
CSGNASEGNN SWWKSSSSDK GKVKIRRKLR EPRSYYRCTH SNCRVKKRVE RLSEDCRMVI  180
TTYEGRHNHS PSDDSNSSEH DCFTSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149KIRRKLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595924.11e-108PREDICTED: probable WRKY transcription factor 12
TrEMBLA0A1S3ZUB81e-106A0A1S3ZUB8_TOBAC; probable WRKY transcription factor 12
STRINGXP_009595924.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73362029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-20WRKY family protein