PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02375g11003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 324aa    MW: 36917 Da    PI: 7.7218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02375g11003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+ +++q G+g +W + + ++g++R++k+c++rw++yl
  Niben101Scf02375g11003.1 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPPKIGLNRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding37.46e-1269111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf02375g11003.1  69 GGFSEEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.161962IPR017930Myb domain
SuperFamilySSF466895.43E-2611109IPR009057Homeodomain-like
SMARTSM007177.1E-121364IPR001005SANT/Myb domain
PfamPF002491.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-241569IPR009057Homeodomain-like
CDDcd001672.71E-81662No hitNo description
PROSITE profilePS5129421.76163117IPR017930Myb domain
SMARTSM007173.4E-1167115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001674.21E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPPKIGLNRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QRQKQGSRKG KEINSNMAIS DNDYNNQFPC WPELPILQPI PFFNDEPRFN DHSSIRKLLI  180
KLGGKFSDQD QLIINEAPNP QYPMDNSLLM QPIYQKIPIN LISSAPTENV LANAQYNMDR  240
AASSFTAELE HIIQNNQNKL DGLEILYDQD MLIDKSASTC GGNLDWEAMN PFVLPLPPIV  300
DEGFQQGARI QEDAFDKLRY PMAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797657.10.0PREDICTED: transcription factor RAX3-like
RefseqXP_016462597.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y96e-80RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A1S3ZE990.0A0A1S3ZE99_TOBAC; transcription factor RAX3-like
TrEMBLA0A1U7Y0B60.0A0A1U7Y0B6_NICSY; transcription factor RAX3-like
STRINGXP_009797657.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-78myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]