PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02369g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 454aa    MW: 50559.6 Da    PI: 7.3559
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02369g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11144196155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+  +     +   +++ g f+ta  Aa+a+++a+ k++g
  Niben101Scf02369g04004.1 144 SQYRGVTFYRRTGRWESHIWYeY-----CyfNYYQFGGFDTAHTAARAYDRAAIKFRG 196
                               78*****************9977.....4579***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-6144196IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-12144205IPR016177DNA-binding domain
PROSITE profilePS5103215.409145204IPR001471AP2/ERF domain
SMARTSM003801.2E-20145210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-13145204IPR001471AP2/ERF domain
CDDcd000181.08E-17145206No hitNo description
SuperFamilySSF541719.15E-6239283IPR016177DNA-binding domain
CDDcd000181.77E-11239284No hitNo description
SMARTSM003809.2E-11240288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLDLNVNVIY DENYIVETNL PEGSVADHES GTSNSSSLRN AEATSSAGGD DDTCTTRAGS  60
LFAFNFDILK FGGVDATSRS NEFVTRQLFP VHDGELNRPG QTDRVNFSSA RSGFEDERTV  120
LQQQPQQEKP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWYEYCYFN YYQFGGFDTA  180
HTAARAYDRA AIKFRGVDAD INFSISDYEE DMKQMKDLGK EEFVHLLRRH SNGFSRGSSK  240
FRGVTLHKCG RWEARMGQFL GKKAYDKAAI KTNGREAVTN FEPSAYEGEI NSEPQTEGSQ  300
HDLDLNLGMS TSSSKENNKL GGSYYHPYDM QDATESKMDK PGPVIVGSSH LKGLPMTSKQ  360
AHLWSGAYSN FSPTYEGRAS DKRKEIGSSQ GPSNWALRMP SRVDTAPVSM FYTAASSGFL  420
TSATAFITSS ASPVAPSTNA SQYCYQFSPY VPPP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611312.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A1U7X6C00.0A0A1U7X6C0_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009611308.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-89related to AP2.7