PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02351g06002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 29917.2 Da PI: 6.4423 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.2 | 6.8e-27 | 86 | 140 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt+eLHerFv+av +LGG+ +A P++i++ m+v Ltl+h+kSHLQkYR+ Niben101Scf02351g06002.1 86 KRRMKWTEELHERFVNAVVELGGAWEAKPRAIKRKMQVRALTLYHIKSHLQKYRM 140 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.045 | 83 | 143 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-13 | 85 | 143 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 86 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 86 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.2E-9 | 88 | 139 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MFPLVPFAMN DNARQYRRIP ILDRHFQEPP NPLPLNNVPA MANQNHQPLI FYGELNVMNN 60 DDNHLRFFDG NVHQVEQEVD QPRLVKRRMK WTEELHERFV NAVVELGGAW EAKPRAIKRK 120 MQVRALTLYH IKSHLQKYRM TQEPDEARRR KAMKKLSLEE RQQNLLHEVE EQMKEVATKF 180 QTMLPFEDQA GSSNSVPMLP HQFPSVVLAP PPVDVYIPQP PTEAADVHVP PEMEDMVAQS 240 IAENSVEDFL RALELAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-15 | 86 | 142 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 87 | RLVKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786306.1 | 1e-159 | PREDICTED: uncharacterized protein LOC104234442 isoform X1 | ||||
Refseq | XP_016513437.1 | 1e-159 | PREDICTED: uncharacterized protein LOC107830405 | ||||
TrEMBL | A0A1S4DJ92 | 1e-158 | A0A1S4DJ92_TOBAC; uncharacterized protein LOC107830405 | ||||
TrEMBL | A0A1U7X9G8 | 1e-158 | A0A1U7X9G8_NICSY; uncharacterized protein LOC104234442 isoform X1 | ||||
STRING | XP_009786306.1 | 1e-159 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15338 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-20 | G2-like family protein |