PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02316g03001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 28525 Da PI: 5.2583 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 97 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW+AeIrd s+ r kr++lg+++t+eeAa +++a+ kl+g Niben101Scf02316g03001.1 97 KFMGVRQRP-WGRWAAEIRD-ST---RgKRVWLGTYDTPEEAATVYDEAAVKLKG 146 899******.**********.33...34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 8.2E-88 | 2 | 242 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 2.17E-31 | 96 | 154 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-29 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 97 | 154 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-13 | 97 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 97 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.682 | 97 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-9 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-9 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVVSKTVKFS QHIVTKNKHV PEQNEKSNFH SKFSQRVVRI ILTDADATDS SDDERQNTGR 60 RVKRHVTEIN LMPSPNLICE KKRRLLSPDT DVTCRKKFMG VRQRPWGRWA AEIRDSTRGK 120 RVWLGTYDTP EEAATVYDEA AVKLKGPDAV TNFPKVLTAD ITETESVTDG GEKSENDVAL 180 SPTSVLRNDY FTPFDDLRFC EVDAFGFDVD SLFRLPVFGM SEKYYGEEFG EFDFDDFALE 240 ARSCGLFCCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 97 | 154 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607079.1 | 1e-158 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Refseq | XP_016468771.1 | 1e-158 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 1e-112 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A1S3ZWU7 | 1e-156 | A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like | ||||
STRING | XP_009607079.1 | 1e-157 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-30 | cytokinin response factor 4 |