PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02287g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 427aa    MW: 48717.7 Da    PI: 6.5172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02287g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12258304354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h e+Er+RR+++N++f  Lr+++P+       K++ a+ L  Av YI++L
  Niben101Scf02287g00010.1 258 KNHVEAERQRREKLNNRFYALRSVVPNV-----SKMDRASLLADAVTYINEL 304
                               589************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-3713165IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.1E-17255319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.59255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-13258309No hitNo description
Gene3DG3DSA:4.10.280.104.0E-16259313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-15261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEDITSNFLT NTLQKHLQYI IHSRQEWWVY AIFWQASKDA NGRLIFSWGD GHFRGTKDLT  60
NLARVCIANV DNNVSNTELF YRVSVPKYFM ADNELIVRAY NPTSYIWLNN YHELQLYNYD  120
RAKEAHLHGI RTLVCIPTPN GVVELGSSEI IQENWDLVKL SRSLFGLSNN NIITSSPINH  180
QDLSSFNFVS LGENHQVEND SPQATDTELK QETVDGNRSL GNSDSFENVS STINNINQPI  240
KRGRKSSSCS TTTTEMAKNH VEAERQRREK LNNRFYALRS VVPNVSKMDR ASLLADAVTY  300
INELKARVEE LEPYKIQSQK PKRQCATNSV QTVPSTVDNR ANNSFGMEVE VRIIGFEGMV  360
RVQSPDMNYP CARLMNVLRE LELQVNHASV SSVKNLMLQD VVIRVPNEVA NEEVLKSDVI  420
LADNYYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2381654192Transcription factor MYC3
4rqw_B1e-2381654192Transcription factor MYC3
4rs9_A1e-2381654192Transcription factor MYC3
4yz6_A1e-2381654192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236365.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1J6KKT80.0A0A1J6KKT8_NICAT; Transcription factor bhlh14
STRINGXP_009796881.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-61bHLH family protein